RNA id: TU356705



Basic Information


Item Value
RNA id TU356705
length 178
lncRNA type sense_over
GC content 0.31
exon number 1
gene id LOC113539549
representative False

Chromosome Information


Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2715662 ~ 2723581 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


AGTTCATTGTGGTTTTAAACTTAAATGCTTGAATAAAGGTCAACTTTGTATttgatgtatttgtgtatttattctaAAGGACACTACATTTAAAGCCGATTTCAACTTAATGGGGACGAGAACACTTTTTGGCACAAAGTTTTCCTAAAACTATCGTACCATATTGTTACACTTAGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU356707 lncRNA upstream 6322 2716700 ~ 2717082 (+) True G300838
TU356696 lncRNA upstream 47034 2674367 ~ 2676370 (+) True G300827
TU356581 lncRNA upstream 205199 2436366 ~ 2518205 (+) False G300723
TU356582 lncRNA upstream 205199 2516745 ~ 2518205 (+) True G300723
XR_003403944.2 lncRNA upstream 336303 2375972 ~ 2387101 (+) True LOC113539650
TU356706 lncRNA downstream 1407 2724988 ~ 2725736 (+) True G300837
TU356708 lncRNA downstream 2683 2726264 ~ 2726592 (+) True G300839
TU356709 lncRNA downstream 3723 2727304 ~ 2727511 (+) True G300840
TU356710 lncRNA downstream 4903 2728484 ~ 2729607 (+) True G300841
TU356712 lncRNA downstream 11455 2735036 ~ 2736007 (+) True G300842
XM_026935356.2 mRNA upstream 9253 2704703 ~ 2714151 (+) True atxn7l2a
XM_026935357.2 mRNA upstream 9253 2704704 ~ 2714151 (+) False atxn7l2a
XM_026935392.2 mRNA upstream 26437 2684049 ~ 2696967 (+) True sypl2a
XM_026935565.2 mRNA upstream 82081 2635314 ~ 2641323 (+) True zgc:172270
XM_034314063.1 mRNA upstream 93683 2625147 ~ 2629721 (+) False si:ch211-213o11.11
XM_026935604.2 mRNA downstream 31195 2754776 ~ 2761167 (+) True ldlrad2
XM_026935236.2 mRNA downstream 40081 2763662 ~ 2766405 (+) True chchd4a
XM_034314451.1 mRNA downstream 63304 2786885 ~ 2827062 (+) True dnah1
XM_026935705.2 mRNA downstream 104307 2827888 ~ 2852258 (+) False mapkapk3
XM_026935704.2 mRNA downstream 104308 2827889 ~ 2852258 (+) True mapkapk3
TU355411 other upstream 1224917 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 1225777 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 1858516 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 1878593 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 2202517 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 1743496 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 3940493 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 5778057 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 5778057 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 7789090 10512671 ~ 10513270 (+) True G305515

Expression Profile