RNA id: XM_026935358.2


Basic Information

Item Value
RNA id XM_026935358.2
length 3051
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC113539549
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2715662 ~ 2723581 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCACAGACACGACACTTCCCCGTAACTCGTGACGTAActcttatttattgtttttttttcctgtcatgGTATTTAAAATGTCCCTTGTGACTGTGTCCATCCAGGACCGAGTTGCTGTAAGGAGTGTCAGTCCATGTTTAACGTCCTCAACCCTGTCTAAACTTGTATTTACTGGAAGGACGCGCGCGCACCAGCCGCACCCGGAAGTGGCACTGCTCCGTTCCGTGTTGTGTTTCGGCTCGCATGTGGCCTCCGTGGCAGAGCaataagaaggagaagaagaagaagaaggagcaggaggaggaggaagagaagaagaagaaaaagaagaaggagactCTCGGTCTAACATGATCTCAGCACGGACAGCGCCTCACGCTCGGTGTTTCTGGTCAGAAGAGCTTTGGCTCGTGTGTTCGGCTCCAACCTGAGATACACTaaccaggagagagagagagagagagagagagagagatgcggTCGGCAGTGGAGTACAGTCCGGTCGGTGAGGGGCTCGGGATGCGGGAGTACTGGCTGTACGCGTGCATGCGCAAAATCGCTCTCGTGGCCGCGCATTGTGTCGCTCTGGGCTTCACCGCGCTCATCGGCGTCCTGTCCCGACCCGGAACAAgtCTCTTCTCTTGGCACCCGCTCTGCATGTCACTCGGGTTTTGCCTGTGCATGACGGAGGGGATCCTGCTCTTCTCGGGTGAGGGCTCTCCATGCTGCTTAAAGTCCCGGAAAGGGAAGATCCGCACACACTGGTTCCTGcaggtgctgctgctgcttttcgCAGCCATGGGCCTCGGCTTCATGGTGGCCAGTAAGAGGAAGTCGGAGCACCCCCACCTGGAGACATGGCACAGCCTGCTGGGCGTCGGGACGCTGGTGGCTACGGCGCTGCAGGTGGCCTGCGGCATGTGCCTGCTGTTCCCCAAGCTCATCCACACCGTATCCGTGCCCCGGCTGCGGCTCTACCACGCCACCTGCGGCCTCGTGGCCTACCTGCTGGCCACCGTCACCGTCACAGCGGCCTTATTCAGCGACTGGTTCCAGGCCACCGTCAAGGGGCCGATTTGGTACGCCTTCCTGCTCCTGCCTCCGTTCCCTGCTCTGGTGGTGATGAACCAAATCACAAACACCTTCCTGCCTAAGAAGAAGCTAACGACGTGAACCATCATGACAAGCACGAActaacacaatataaaaaaatggacTTATACTGCTGTTTAGGGTTCCAAAATGATCCTCACACTCTCgtggtctttttttttacgACTTGAGTTCACAAGCTGTGATGCAATGTTGAGCTTTTCCAATATGGTGGGACTCATAGCGGtcaatgctaagtgtaattacagtgtaattttaaatgaactgaGATTTTTCATAGTAATCCCTGAAGAAAATTGTTATATTCCTAATAATTTCATCTCATTTCCACTATCACTAAGCCTTTACTTCGTGTGTATTAAACACTTAACAACCAGATGCAAGATAACTAAGCTAACACTTAGCTTCAGTCAATCGCTTATGGTTGTCATTCATATTTCGCACAACTCTAGCATGTTAAATCgacatatttatgttttgtttgaaGACACTATATAAAACTAGCTGCACTTGAAGTGTGACGTATCTCCTGTGAAAACATACTTGCACATTTTTtaaggtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttaaagAAATGATACTTCACTTTAATTCGAGAAGTATGTTTCTGGACGGAATAATGTGTGTACATCTGTACTTTAACAGCTGTATTATGCTTCCTCTTAGACGTGTGTCAGTATCTGATATTTATGATAATTTTCCTAACCTTTTATAACGGTATAGCACAGGAAAGAGTTTTAGCTACAAGCTAGACTTAGCAAGAGTTCAAGTTTGTCAAGTTTTCCTAGCTTTTATGGCACTCTCATGTGGTGAACAGGATTGTTTTATCCTCAGTACGTGTGCTGCTGCGTTGAAATTTAGCTATACTGAGAATTTCTGGAGTATTTCTTTAGGAATTTACCAGctcatctgaggtaaatgttgaccttactgacatttttaattgtttccaGTCACTCTGCCTTTACACTGTccatataaaaacacatgaattATTACTAATGGttttggtaataataataatagctgccCTTGTGTGGCCTTTAAAATGGTGCCTATCCCCAGTTAGCAATATTTTGAAGCGTATacaataatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtaaaagATAAGGCAAAAAAGGGAAGAACCATGAAATGATGGAAAGTCTGTTACGTGCTAACGGCAATAACAATGCATAAATAGAGGccttgttgtcatggttacattctATATCTCGTGTATGAATCTGCTTTAGAGAATTCCAGTAGCAGAAAATAACATACATATGTCAACCCATCAGAAACAAGTATTTTATGTGGTCGTGATATTATATACGTGGTATACTGTATAACTGATTGGCAGCTCATTCCTACTCGTGTGTGAGGATGTGCCTTTACTTAGATTTACTCTTGATCCCGCGTACACACAAACCCTTAGCGGTAGAAAAGTGTAATCAAGGAAAAATTAATTGTTCATCAGTCATGTCAGCATCATTGCTGACTTCGGTGCTCAGAACAAGGGTTTGCGCATACTCATGGCCAGGAGTAATTCACACTATACACACGTCCTCAATCAAAAAGAATAACTTgataaatgacattattattaaatgatgtAGAAAAAGGTCAAAAGGTCACAAAGTTTACGCACAAACCGATGTGTACGCACGGTTGAAAACTGAGACCCCTGAGGTCCTTTGGCCTGTTGAGCTTCACATTACACACTGAAAGGAATCacgggacaaaaaaaaaccctgttgcTCTCAGAGTgaggattttaattttgatttatcGAGTATTTGTTAACTGAGGTTTTGCTCTGAGTTCATTGTGGTTTTAAACTTAAATGCTTGAATAAAGGTCAACTTTGTATttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU356696 lncRNA upstream 39292 2674367 ~ 2676370 (+) True G300827
TU356581 lncRNA upstream 197457 2436366 ~ 2518205 (+) False G300723
TU356582 lncRNA upstream 197457 2516745 ~ 2518205 (+) True G300723
XR_003403944.2 lncRNA upstream 328561 2375972 ~ 2387101 (+) True LOC113539650
TU356706 lncRNA downstream 1530 2724988 ~ 2725736 (+) True G300837
TU356708 lncRNA downstream 2806 2726264 ~ 2726592 (+) True G300839
TU356709 lncRNA downstream 3846 2727304 ~ 2727511 (+) True G300840
TU356710 lncRNA downstream 5026 2728484 ~ 2729607 (+) True G300841
TU356712 lncRNA downstream 11578 2735036 ~ 2736007 (+) True G300842
XM_026935356.2 mRNA upstream 1511 2704703 ~ 2714151 (+) True atxn7l2a
XM_026935357.2 mRNA upstream 1511 2704704 ~ 2714151 (+) False atxn7l2a
XM_026935392.2 mRNA upstream 18695 2684049 ~ 2696967 (+) True sypl2a
XM_026935565.2 mRNA upstream 74339 2635314 ~ 2641323 (+) True zgc:172270
XM_026935288.2 mRNA upstream 85941 2621512 ~ 2629721 (+) True si:ch211-213o11.11
XM_026935604.2 mRNA downstream 31318 2754776 ~ 2761167 (+) True ldlrad2
XM_026935236.2 mRNA downstream 40204 2763662 ~ 2766405 (+) True chchd4a
XM_034314451.1 mRNA downstream 63427 2786885 ~ 2827062 (+) True dnah1
XM_026935705.2 mRNA downstream 104430 2827888 ~ 2852258 (+) False mapkapk3
XM_026935704.2 mRNA downstream 104431 2827889 ~ 2852258 (+) True mapkapk3
TU355411 other upstream 1217175 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 1218035 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 1850774 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 1870851 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 2194775 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 1743619 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 3940616 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 5778180 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 5778180 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 7789213 10512671 ~ 10513270 (+) True G305515

Expression Profile