RNA id: XM_034314104.1


Basic Information

Item Value
RNA id XM_034314104.1
length 8914
RNA type mRNA
GC content 0.48
exon number 39
gene id LOC113539463
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 3850561 ~ 3913086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccctcctctccccCACCCCTCCTTCCTCTCCCACCCTTTAATAGGCTACGTTATTCAAGTTCGCCAAGAAGTCGGACAGAGCTCGCGGACCCCGGCGCACGCTCGCGACCATGTAATCCGCCCCTGCGCGCAACAGcagcaccaccagcagcagcagcacacgcGAGGAGAGCCGCGCGCGCGCCGGAAAAGAAAACCCCTGGAATATTAGTGGATTTGCGCGCGCTGTTTGCTAACTTAATTTTGCAGATTAATCATGCACGCTTTTCTCTGGGGTCTGGGCTTGTTCATCCTACTCCCCGACTGTGTGAATGTAGCAGCTTGGACCCGGAGAGCACCGGCACGCTCGAGAAAAGCCAGATCACTGGAGCACACCGGAGCGCACGAGATCGTGACGCCCGTCAGAGTGACCGAGGCCGGGGACGCGTTGCCCCAGAGCGCGCACTTCAAACGCAGGAAGCGGAGCGCCGATAACTACACGGCACCGGAACACTGGGAATCCGAGCACGTGCATTACAGACTCTCCGCCTTCGGTCGGGACTATCACCTGAACCTGACGCTCGAGGCGGGATTTATTGCGCCGCTTTATACCGTAACCGTCCTTGGCACGAGGAACCGAACGcacgaggaggaagaggaggaggaggaggaaacgGTGTACAGGCACTGTTTTTATAAAGGACACGTGAACGGAGAAACGCAGCACGCAGCCGTCATCAGCCTCTGTTCCGGCCTGCTTGGCACTTTCAGGTCATCAGAAGGGGAATACTTTGTGGAGCCTCTTCACAGCTACAATGGTGAGCATTATGAAGAAGAACACATCAAACCTCATATCGTGTACAGAAAAGATGCACACGAGAGGGCCAAAGAAGATGCATCGTCATGTGATACTGCAGGTCATAAGGCGGCTGCTGAGAAAAACATGGTATCTGGAAGCATGTTTTCTGACCTGGAGAGTCTCAGCGCAGGGATTCTCTCGGGCTCTTTACCCTCGACAGAAGACAAGCAGCCATCAGCTAACGACAGCAGCAGTGACTCAGGACCTCACCGGAGAGCAAAGCGCTTCCTTTCCTACCCACGCTTCTTGGAAGTCATGGTCGTTGCTGACTACAAGATGGTGGAACAGCACAGGAGCAACCTCCAGCACTACGTTCTAACGCTAATGTCTATTGTTTCCTCAATCTATAAGGATCCCAGCATTGGCAATCTGATCAACATTGTCGTTGTGAAGCTAGTCATAATAAACAATGAGCTGAAGGGTCCAGTTATCTCTTTCAATGCACAAGCCACTTTAAAGAACTTCTGTGTCTGGCAGCTGGCTCAGAACAACCTCGACGACGAACACCATGACCACTATGACACGGCTATCCTCATCACCAGGCAGGACATCTGTCGAGCAAAAGACAAGTGTGACACTTTAgGTCTTGCAGAGTTAGGCACAGTGTGTGATCCATACAGGAGCTGCAGCATCAGCGAAGATAGCGGCCTCAGTACTGCTTTCACTATCGCTCATGAACTCGGCCATGTGTTCAACATGCCCCATGATGACAGTAACAAGTGTAAAGAGGACGGTGTTAAGATTCAGCAGCACGTGATGGCCCCCACACTCAACTATTTCACCAACCCCTGGATGTGGTCCAAATGCAGCAGAAAATACATCACAGAGTTCCTCGACACAGGGTATGGAGAGTGTTTGCTCGACGAGCCCGTGTCCAGGCCATACCCCCTGCCCCAGCAGCTCCCCGGGCGCACATACAGCGTCAATCAGCAATGCGAACTCATATTTGGACCTGGGACACAGGTCTGCCCCTATATGATGCAGTGCCGACGGCTTTGGTGCACGAGTCCAGAAGGAGCTCAGCGTGGCTGTCGAACCCAGCACATGCCCTGGGCTGACGGCACTGACTGTGGCCAAGGAAAGCACTGTAAACATGGTGTGTGCATCACGAAGGAGCATGACTTGGGGCCGGTGGATGGAGAGTGGGGCGTGTGGAGTCCCTTCGGTTCCTGCTCACGTACATGTGGAGGGGGTATCAAGATCGCCACCCGGGACTGCAACAGACCTGTACCTAGGAATGGGGGACAGTACTGCGTGGGGCGCAGGATGAAGTTTCGCTCCTGCAACTCTGAGCCATGTTCTAAACAGAGAAGAGATTTCAGAGAGGAGCAATGCGCTGCTTTCGATGGCCGCCATTTTAACATCAACGGTCTACCTCCAAATGTGCGCTGGGTGCCCAAGTATAGCGGAATTTTAATGAAGGACCGCTGCAAGCTCTTCTGCAGAGTGGCAGGAAACACAGCCTACTATCAGCTCAAGGATCGAGTCATCGACGGCACGCCGTGTGGTCCCGATACCAACGACATCTGTGTGCAAGGCCTGTGCAGGCAAGCAGGTTGTGACCATATTTTAAACTCCAAGGCCAGGAGAGATaaatgtggagtgtgtggggGAGACAACTCATCCTGTAAGACAGTGGCAGGGACATTAAATACAGTGCACTACGGTTACAACTTTGTTGTTCGAATCCCCAGCGGTGCTACAAACATAGACGTGCGACAGCACAGCTACTCAGAAAAACCAGAAGATGATAACTACCTCGCCGTGGCCAACAGTCGTGGAGAATATTTACTCAACGGAGATTTTGTGGTCAGCATGTTTAAAAGGGAAGTCAAAGTGGGGAGAGCCATCCTAGAGTACAGCGGCTCCGATCACATCGTCGAGAGACTCAACTGCACTGACCGCATCGAGGAGGAGATCGTCATCCAGGTTCTGTCTGTAGGTAACCTGTTCAATCCAGACGTCAGGTATTCCTATAACATTCCCATTGAAGACACGACTCAGCAGTTTATCTGGGACGCATACGGCCCGTGGCAGGAGTGTAGCCGTCTGTGCCAAGGGGAGCGTAAGAGGAAAATCCTGTGCAATCGTGAGTCGGACCACATGGTGGTTTCGGATCAAAGGTGCCATGGCTCACCTCGACCAACAGCCATCACAGAACCCTGCAACACAGACTGTGATCTCAGGTGGCACGTGGCCCGTAAGAGTGAGTGCACGGCTACATGTGGACTGGGTTACCGCACGCTGGAAATCTACTGCGCTAAATACAACCGAAATGACGGCAAAACCCAGCGAGTTGATGACCGAAACTGCAGCCACCTGCACAAACCTAACGATAAGGAGGTTTGCCGAGGCGACTGTATCTCCGGCGTGTGGGAGTACTCGCCCTGGTCAGAGTGCTCGAAAAGCTGCGGAGGGGGAACACGCCGTCGGAACGCCATTTGTAAGTCGCCTGACAACGACGAGGGTAAATGCAACACAAGGGACAAACTCGTAGTCCAGCCCTGCAATGAGTTCCAGTGTCCACAGTGGAGGACTGGCGAGTGGTCAGAGTGCCTGGTGACGTGTGGGAAAGGCTACAAACACCGTCAGACGTGGTGTCAGTTCGGAGACGAGCGGCTGGACGAGCGTTTCTGCACCTCAGCCAAACCGGAGTCGGTGCAGGCGTGTCAGCAGCAGGAATGTGCGTCCTGGCAGTTCGGCTCCTGGGGCCCGTGCACCACCTCCTGTGGCCCCGGCTATCAGAGAAGAGTGGTGAAGTGTGTCGTCAGCTCGTCCGGCTCGGTCAGGGATGACACTGACTGTAACGCAGCGACACGCCCCACTGACACACAGgACTGTGAAGTCTCTCCATGCCCCGTCACCCATCCTGTTTCTCCAGACACCAAACTTCCTCATCTGGGCCACAAAACCCAGTGGCGCTTTGGATCATGGACTCAGTGTAGCGCTACCTGCGGGAAGGGAATACGCATGCGCTATGTCAGCTGTCGTGACACTCAGGGCGGCGTGGCGGAGGATTCATGGTGTGCTCATCTCCCCAAACCTCCCGCTACAGACGCGTGCTCCGTGTTGGCCTGCGGTCAGTGGAAGGTGCTGGAATGGACTCAGTGCTCTGTTTCCTGCGGTCTGGGTAAAGCTACTCGTCAGGTTCTCTGTGTGAACTTCAGCGATCAGGTTGTGGACATGAGTGAGTGTGACCCGGACGATCGGCCGGTGACAGAGCAGGAGTGCGCCATGCCTCAGTGCCCGTCTCGCCCCAGCGACCACGCCGCCGTCCCTCCTAACCAAGACGCCCGTAAAAAAGCCGCACCCACTGGCAGGGTGGATCGAATCCGAGGGGCGCGTCCACAATCGCAGTGGAGGTTTGGACCGTGGGGAGCGTGCTCGAGCACGTGTGCCGGAGGATTCCAGAGGCGGGCGGTGGTGTGCCAGGATGAGAACGGTTACACGGCCAACAGCTGTGACGAGAGCATTCGACCTGCAGAACAGCGCACCTGCGAGTCTGGACCGTGTCCACAGTGGGTGTACGGCGAATGGGGCaagtgttcGAAGCCCTGTGGTGGGGGAATAAAGACACGCCTCGTGGTTTGTCAGCGGCCGAATGGCGAACGCTTTAGCGATCAGAGCTGCGAGATTCTGGACAAACCGCCTGACCGAGAGCAGTGCAACATGCAGCCGTGCTCTCACTGGAGAGCCGACCCGTGGAGCTCGTGCTCCGCCTCCTGTGGGAAGGGCTTCAGACACCGCAACGTGACCTGCGTCAGCCGCTCCGGCCAGCCAATGGCGGAAGAGAACTGCCTGCACCTGCCCCGCCCCCGGAAGGAGAAGTCCTGCAAAGGTGGGAAGTGCCCCAAGTGGACGACAAGCATCTGGGGAGAGTGTAGTGTGACGTGTGGTTCTGGCCAGAGGAGTCgcgctgtggtgtgtgtgaatcaCAGCGGGGACGAGATCCACCACTCACACTGTTCAGTACAGAAGAGACCAAACCACAGCGAGCCGTGTAACACTCAACCCTGCGAGTTCGTCTGGATCACAGGGGACTGggaggagTGCTCTGTCACCTGTGGTCAGGGCTACCAGAGGAGGCGGGTCTCCTGCAGCGAAGTGCATTCTGGGAATGAGAATTATGAATACAGCCACCAGGGGTCATCTAGCTGCCCGGGGACACCTCCTGAGAGCTACCAAGCGTGCAGACTACCTCCGTGCCCTTCAAGCCATGTGTACAGCTGGAGAGTGGGCATCTGGGGACCCtgttcaTTTAGCTGTGCTGATGGCTGGATGGAGCGCATGGTGCAGTGTTATTCAGAAGAAGGGGAGCTCAGTGATGAGTGTGACTCCAGCTCGAAGCCAGAGAGTAGGAGGTCCTGCACTAACCCAGACTgtgaaTTGCCGTTTAGTTGCAGGGATGTGCAGATGCAGAATGGTGTTGTATCTGATGGAGAGCAGCTTCTCAGTGTACAGGGCAAAGCACGTAATATCTACTGTTCAGAGATGCACACAGACAGTCCGAAAGAGTACATCACTCTCATGACCGGAGAGGGTGAAAATTTCTCCGAGGTTTTTGCATACAGGCTGATGGATCCCACGCAGTGTCCATCAAATCTGATCCGCAGAGAGGACTGCCAGTGCCGGAGAGACTACACAGCCGCAGGCCTGTCCACTTTCAGCCGGGTCCGTCTGGACTTGAGCAAGATGACCATCATCACCACAGACTGGAAGTATTCGCATACTCGAGAAGGTCATAAGGTTCCTTTCGCCACTGCGGGAGACTGCTACAGCGCCGCCCGCTGCCCACAGGGCCGATTCAGCCTCAACCTCTCAGGAACAGGCTTCCAGGTGGCTGGGAGTACCCAGTGGATTTCCCAAGGGAACTACGCCGTGGCGGACATCCACAAGTCCCAGGATGGCAGTAGAGTGACAGGAATGTGTGGTGGCTACTGTGGCAAATGCACTCCGTCCTCCAGTTCAGGCCTTCTTATCCAAGTTACATGAGCCCCAACCTTCTTACAGGATGTTCTCTTCTCCTGGGATTCTTCTCTCGGTGTGGTGCTAAAGACAATAAAGACAATGAAGAATGTCCCTCGTCCATCCCCTGACTTTCTGCTGTCCATGTGTAAATATCAGCTGGTGTATGTAATGTACAGAATgtgttgaattatttattataatccacatttatttttatacaattatttaaaatgctaaCAAAGCCATTCGTGAATTGTTGCCTGTACAGTCATAACAAAAGACGTAATGTCCTTCATCGATGTACGTTTTATAGTTTTGTCTAGCATGTCATGCTGAGTTTTGGGTCTTATAATAAGTGTTGCATTTTTTCATAATTGAAAAATGTCCTGAGTCAGGGTAGGTAGGACATTAAAAAACCAGCAGCTAAAAAATAACACTTGGGAAAAGTATTTACATCCTACGTTTTCATGTTGGTGTCATACATACGACCTGTGGATGTTTAAGGGGACTTGTTGAGTTCGTGGGTCCTGTAGAAAGGAAGTCAGATTTTCCTAGCTCAGTTTAACCCGGCTTTATGCTGTCGCagacaaaaatcataaaagCGTTGAAAGTGGAGGTCAGCCGATGACAGGAGGGGAGGGGTCAGAACCGGACCATGCTGATTGATGAAGTAACCAGATTGtagttttctttaatcacaggtctatcgttagaggatcttcatcatatgaAGAACACATTTTATCATACAGTCagttatagaattcagccaagatttttTTGGGATCATCTCGCAGGATATGTGACATAATATTCTTAAAAGACCACTGAAATCGCACAGTGTAAAACAGGCTTAAGTTAGTGGAGGCAAAATAGAAACTCAGGGTGATTCTAGAGAATGAAGCAGGTAGGGGAAGTGGTGATTGGCTCTGGTAATATAACCTTCATCAGCAGGTGGACAAAGTTTAGCTGGATGTAACATTCCAGACAGCATAGGCAATCAGTGGACAAACAAGGCTCAGAATGTACACAACTAGAgtttggcaagacttcgcaatgaccGTGTAACGTCCTGGATTCTGAACAGAATAGCAGAATAAAAATGTTGACAGGAATCTGAGAGCAAAATCGGCCATGCAGTCTGGTTGGGAGGGATGGAATTACTCTCTACTGTAAGTCAgagtgacactaaccaatcatgggttTCTGTGAGTTCGTGTATGTGGAATAGTGTAGACAGTGAAGGGGAGGgtatattaaaggaatactccagtgtgTCTCATCCTGATCTCTACTGACCACATGTGTACTGAATATGTTATtactacaaacaaaaaattcatttcccagtactgaggaaaaaaaattcaagaatattacaattaaaatgttaacCATAAAGGTTCAAGGAtaagacagaaatgaaaaaagtctTCACAAACGTGTTCTTATGGAGTTTTGTCCAACTTTCCAACACTGTGGTAAGCGATTCGTTAAAAAGTAGTTCCGGTTACTTTCCATTTTCTTCGATTCTTTCCTCAGATGAAGTAATCCTAATTCTGGAAGATATACAAATTATACAGATTAGATCTTACTTTTACAAATTAATCTGTCTCAAGAATGAATGGATGTGTTCTagaaaaataagtgaaaaatcttaaatatttgaCAAAATTATGACTAAGTTTAAAGTAACCAGTTTTTCACATCTTTTCTCAATATGTGTTGAAATTTGTGTTTGTGGTAATCAAGAACTGAACATACACTACAGATACAGTGAAtcgagattaggttgaaaaacactgCAATATTTCTTTAATGGAGTTTGATAACAAAATGAAATCTCTTCAGATAGTGTGGAAGtgagaatgtacagtataaaggAGCCTTCAGCATGTCGTCGAGAGTTTATTAATCGCACTGGGATTTAAAAGCCTGAAGTACCGCTACATGGCAGAAAGATAGCTATCGGGTCTATCGAGAGCTCTGACATgacaaaggagaaaaaaagcagctttgcagTGAAGATTTTtgagtctgattttttttttaaagacaatcCGTGAGAACTTTCTCCTTTGACAAGGAGAGGAAATATAACATTTGGTGCTTATGCTTTGGTGAAATATAACATTAGTtgtttcagctttatttcaggAGATGTTTACTGCAGGTAAAGATGATGCTTACTTTTAGCCATAACCAAAAGTTTTGGGAGTTTGAAAATGAAGCCCACAAGATGGATGACAATTGGtcaattaataattattaagtaACTAAAAAAAGCACCAAAACAGATATAgagaatacagaaaaatatagaaaaaaaacagaaaatatttggtgtttgtttgtttgttttatttttatttctgaataccTCAAAATTCTGCTCATATGTTTTATGTACTTATTTtgtaattagaattttttttttatgactctgctcacaaaaataacaaaattactATTAATTGTGATCTTTTATTGTTATGTTCTATCATTTTCAGGGTACGTCTCATTTTgctttttcatgttcattttcattttgcctactgtttttttttaaattataaatccttcaacattacttttttttaagttttatggTTTCAGAGTATTTCTCAGGCACGTATTGGTTATTCCACAATGTTAATTTTATGAATTTGTATCCATTTTTAGAGCCACTGGTATTGTCCatattcttagaaaaaaaaagccatatgtGTCTTAACCTAACAGACGGTGCTACTTACGTTATAGTTTATTCAATTATTAGATTGTCATTGAGGATCTGGACTCTGAAGTCTTTCCTCATGTTAGGTAAATGTTCTTACTAAAAAAAGGGAGTTCACATTTCATAGCCAAGTCCAAGCAGTCCATGGTTTGTatagttttataaaattatgTCATAATTCAGATTTCATGCACCCGTGTTTGTGTctgcattattatatttacagatgTAAAtcgatttttgtttgtttaaaatatatacatcttGTGTATATACACGTCTTGTGCGTCTGACGATTAAGCCAGATTGATATGGATTTGCAGTGTTACGATTCTTGTACAGATCACGTAAAGGGAATCTTAATGCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU357469 lncRNA upstream 320202 3521792 ~ 3530359 (+) True G301506
TU357449 lncRNA upstream 397056 3452671 ~ 3453505 (+) True G301487
XR_003403928.2 lncRNA upstream 789715 3028940 ~ 3060846 (+) True LOC113539486
TU356639 lncRNA upstream 942507 2906708 ~ 2908054 (+) True G300775
TU356715 lncRNA upstream 1113653 2736478 ~ 2736908 (+) True G300843
TU357807 lncRNA downstream 5244 3918330 ~ 3918531 (+) True G301792
TU357820 lncRNA downstream 20021 3933107 ~ 3933350 (+) True G301805
TU357867 lncRNA downstream 115923 4029009 ~ 4029270 (+) True G301852
TU357872 lncRNA downstream 130004 4043090 ~ 4043866 (+) True G301857
TU357901 lncRNA downstream 219194 4132280 ~ 4210261 (+) True G301881
XM_034314480.1 mRNA upstream 44434 3801729 ~ 3806127 (+) True LOC117599926
XM_034314105.1 mRNA upstream 48228 3623893 ~ 3802333 (+) True magi1b
XM_026935398.2 mRNA upstream 290914 3519749 ~ 3559647 (+) True lrig1
XM_026935483.2 mRNA upstream 465147 3288732 ~ 3385414 (+) True suclg2
XM_034314061.1 mRNA upstream 836869 2977729 ~ 3013692 (+) False tafa4b
XM_026935716.2 mRNA downstream 2500 3915586 ~ 4011768 (+) False prickle2b
XM_034314440.1 mRNA downstream 44473 3957559 ~ 4011768 (+) False prickle2b
XM_026935719.2 mRNA downstream 51581 3964667 ~ 4011768 (+) True prickle2b
XM_026935718.2 mRNA downstream 51581 3964667 ~ 4011768 (+) False prickle2b
XM_026935717.2 mRNA downstream 75715 3988801 ~ 4011768 (+) False prickle2b
TU355411 other upstream 2352074 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 2352934 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 2985673 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 3005750 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 3329674 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 553991 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 2750988 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 4588552 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 4588552 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 6599585 10512671 ~ 10513270 (+) True G305515

Expression Profile