Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU357872 |
| length | 777 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G301857 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 4043090 ~ 4043866 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU357867 | lncRNA | upstream | 13820 | 4029009 ~ 4029270 (+) | True | G301852 |
| TU357820 | lncRNA | upstream | 109740 | 3933107 ~ 3933350 (+) | True | G301805 |
| TU357807 | lncRNA | upstream | 124559 | 3918330 ~ 3918531 (+) | True | G301792 |
| TU357636 | lncRNA | upstream | 130807 | 3910640 ~ 3912283 (+) | False | LOC113539463 |
| TU357469 | lncRNA | upstream | 512731 | 3521792 ~ 3530359 (+) | True | G301506 |
| TU357901 | lncRNA | downstream | 88414 | 4132280 ~ 4210261 (+) | True | G301881 |
| TU357911 | lncRNA | downstream | 94916 | 4138782 ~ 4168646 (+) | True | G301885 |
| XR_004580239.1 | lncRNA | downstream | 106676 | 4150542 ~ 4156726 (+) | True | LOC117599910 |
| TU357907 | lncRNA | downstream | 228230 | 4272096 ~ 4278649 (+) | False | cadpsa |
| TU357949 | lncRNA | downstream | 250601 | 4294467 ~ 4294733 (+) | True | G301921 |
| XM_026935169.2 | mRNA | upstream | 998 | 4037772 ~ 4042092 (+) | True | psmd6 |
| XM_034314440.1 | mRNA | upstream | 31322 | 3957559 ~ 4011768 (+) | False | prickle2b |
| XM_034314052.1 | mRNA | downstream | 36570 | 4080436 ~ 4085015 (+) | True | thoc7 |
| XM_026935742.2 | mRNA | downstream | 114366 | 4158232 ~ 4278673 (+) | True | cadpsa |
| XM_026935677.2 | mRNA | downstream | 245706 | 4289572 ~ 4292368 (+) | True | fezf2 |
| XM_034314381.1 | mRNA | downstream | 245892 | 4289758 ~ 4292368 (+) | False | fezf2 |
| XM_034314204.1 | mRNA | downstream | 290299 | 4334165 ~ 4380659 (+) | True | fgd5a |
| TU355411 | other | upstream | 2544603 | 1496860 ~ 1498487 (+) | False | LOC117599925 |
| TU355413 | other | upstream | 2545463 | 1496860 ~ 1497627 (+) | False | LOC117599925 |
| TU355179 | other | upstream | 3178202 | 863338 ~ 864888 (+) | False | fbxo42 |
| TU355161 | other | upstream | 3198279 | 842980 ~ 844811 (+) | False | LOC113539702 |
| XR_004580271.1 | other | upstream | 3522203 | 518567 ~ 520887 (+) | False | cdkn1a |
| TU358141 | other | downstream | 423211 | 4467077 ~ 4469174 (+) | False | LOC113539599 |
| XR_003403967.2 | other | downstream | 2620208 | 6664074 ~ 6779358 (+) | False | cpne5b |
| XR_004580199.1 | other | downstream | 4457772 | 8501638 ~ 8558911 (+) | False | nfasca |
| XR_004580200.1 | other | downstream | 4457772 | 8501638 ~ 8558788 (+) | False | nfasca |
| TU362120 | other | downstream | 6468805 | 10512671 ~ 10513270 (+) | True | G305515 |
