RNA id: TU357901


Basic Information

Item Value
RNA id TU357901
length 1505
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G301881
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4132280 ~ 4210261 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACAATTTCAAAAAGTATTTACACAACTGCATAATACACATCATTTTAGTGTAATTATCATTGTTTTATATTACTAAACAGCATTATTGtggcatagaaaaaaaaaaaaaaaaaagaggtaggGTCAGTATCTGCTTCATATCAGATGTTCAGAATCGAGAAGGGAAATGCGCCATTCCCACCAAACAGACAAGACACACACGGAGAGGGAAGGAACACTTAGAATTAGAAAAAGACTGACAAGACGAAAGACTTAAAAGacgaacaaacaaaacaacaaatcaaaaAGCACTGAGCAGTCACTCATGTGAGACAAGGAGAGGGTTAGAGATGTTAGAGGgatagagtgagagacagagagtgcaAAAAGGTGCACCGGAGTCTGAGTGGGTGTTAAGGCAGTGTGAACAACTCCACACTAGTGCTGGGCGATTTTCACAATTCACTTCGGTTAATTCGAATGAATATCCACGTTTTAACGGAATTTTCAAAATGTTGTAATCAagattgtacttttttttttttttttttttttttttaaatatgcatgcattttaaatttttaattaaaacacccATAAATCcaatttaaaagtttaaaccaatatgaaggaaaaacacagccttcttaTCCTGATAAACACCTCCTACAGCCTGCACTACCTTCAATCACTGCAcgcttaaattaaaaaacaaacaaacaaacaaacaaacaaaaatgccaaGATAAACAGGCAGCACTTGGCTGAGCTGCAAATATGAGTTCAGAAATATGGAATTATACAGGTTTGAAAGGCAGATGAACAagattatgtaaaatataacgCTGCATTACATCCTATGCGGTAATTCGCTGGTcagaattacgtcattttcgaCTTCGACACGTTTGACAGACGAGGTCGGATGAGTGAGGTATATTTTCTTTCCCAAACAGCAAACTGTTTGGTTAGTGTTTTAGATGTGACAAACGCGTacgtctgtatgttgattaatctaaagctaatactcgTATAtccagtataactcatttaaagctgagaagtttttcattgtttatttctgatgttgtgcacagccatttttttttttttttttttcatttttttgacgtcactctgtaaacagggaaggaactcgGATTTGAGAAGAAGCCATCTccagcaaatagtgcaaacaaagtattttttttgtttgttttttttaaatatgctttctttaaatattctttatttaaaagggTCATTGGTTGCACCATTTGCTATAGATgatgctgttactatttttgcaccCCTACATTTTCCAGACTCCATtctaataaatgcaaaattattctatttatttataattgcattatgtaagaaaaaaaaaattgaaatcgtAATCGAGAATCGttcataaagttgaaaaaaaaaaactaattttttttttcattttccaaaagGAAGCTCAGTGAGCTTGACTCTAATTCTTTAAAAGGCTAAAGAAGTCAAGAAGTAttgag

Function

GO: NA

KEGG:

id description
ko00071 Fatty acid degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU357872 lncRNA upstream 88414 4043090 ~ 4043866 (+) True G301857
TU357867 lncRNA upstream 103010 4029009 ~ 4029270 (+) True G301852
TU357820 lncRNA upstream 198930 3933107 ~ 3933350 (+) True G301805
TU357807 lncRNA upstream 213749 3918330 ~ 3918531 (+) True G301792
TU357636 lncRNA upstream 219997 3910640 ~ 3912283 (+) False LOC113539463
TU357907 lncRNA downstream 61835 4272096 ~ 4278649 (+) False cadpsa
TU357949 lncRNA downstream 84206 4294467 ~ 4294733 (+) True G301921
TU357951 lncRNA downstream 85047 4295308 ~ 4295516 (+) True G301923
TU358359 lncRNA downstream 521892 4732153 ~ 4733061 (+) True G302281
TU358451 lncRNA downstream 610431 4820692 ~ 4820899 (+) True G302360
XM_034314052.1 mRNA upstream 47265 4080436 ~ 4085015 (+) True thoc7
XM_026935169.2 mRNA upstream 90188 4037772 ~ 4042092 (+) True psmd6
XM_026935719.2 mRNA upstream 120512 3964667 ~ 4011768 (+) True prickle2b
XM_026935677.2 mRNA downstream 79311 4289572 ~ 4292368 (+) True fezf2
XM_034314381.1 mRNA downstream 79497 4289758 ~ 4292368 (+) False fezf2
XM_034314204.1 mRNA downstream 123904 4334165 ~ 4380659 (+) True fgd5a
XM_026935399.2 mRNA downstream 180091 4390352 ~ 4418766 (+) True prkcdb
XM_026935400.2 mRNA downstream 180091 4390352 ~ 4418766 (+) False prkcdb
TU355411 other upstream 2633793 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 2634653 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 3267392 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 3287469 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 3611393 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 256816 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 2453813 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 4291377 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 4291377 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 6302410 10512671 ~ 10513270 (+) True G305515

Expression Profile