RNA id: XM_026935742.2


Basic Information

Item Value
RNA id XM_026935742.2
length 5435
RNA type mRNA
GC content 0.50
exon number 32
gene id cadpsa
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4158232 ~ 4278673 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGGCTATGAGAGACACAGCGTGTGCGCGCTACGTAGTgccctgtgtgtttatttggaaTGCGCCCTGAGATTCAGGACCGCGGTCAGCGCCCATAGCCGCTTTTTTCTTGGTAAGTGGCCATCGCTGGTTTCCAATCGCCAAAGAGCAgctggaaaagcagagagagagagagagagagagagagagagggggagaacGGAGAAGAAAGTCCATTTAAGAAAAAGAATCACTTCAGAAAGCTTGGCATTGTTTGCAACACGGTAATTAGATTGCAAAAGCAAGCacggaggaaaagaaaagaaaagaaaagaaaaagcaacagTTACCCGGAGCGACTCTTCAGGCTGTCGGGAAGCAGGTTCTTTCCAGAAGAACGGAAATTTCATGCAGTGAAGTTTGAAGCTTTGATGGCACATCAAGTCGTCGCACTTTTCCGTCCGCGCCGGCGCATCTCCGCGGCTCTTCTGTGACTCAACGGCGCGTATTTTCTCCCCTTCCACCTTCTTAAATTTACCTTTAACTTCGAGCCACCATGCTGGACCCGTCCTCGAGCGAGGAGGAAGATGAGGTGGTGGAGGAAGAGCGCAAAGCGGCGGCGGTGGCGGCTCCAAAGGCCCCCGGGAGCGCGCGGGTCTCATCGAGCCGCTCCGGCCAGAGCGCGAGCGGCTTACAGCCCAGCCGCGGTGGCCACGCGCGGCCCTCCAGCCCCGGACCCGCGGCCACCGGCGACAAGGAGAAGGACGACGTGGAGAAGATGcagagggaggaagaggaaagaaagaagaggctGCAGCTCTACGTGTTCGTCATGCGCTGCATCGCGTACCCGTTCAACGCCAAGCAGCCCACAGACATGGCGAGGCGGCAGCAGAAGaTCAGCAAACAGCAGCTTCAGGTAGTAAAGGATCGCTTCCAGGCCTTCCTGAATGGAGAGACACAGATTGTGGCAGATGAGGCATTCATCAATGCTGTCCAGAGCTATTACGAGGTGTTTCTGAAGAGTGACCGCGTTTCCCGCATGGTCCAGAGTGGCGGCTGCTCGGCTAATGATTCACGCGAGGTCTTTAAGAAACACATCGAGAAGCGTGTGCGAAGCTTACCCGAGATCGATGGCCTGAGCAAGGAGACGGTGCTTAGCTCCTGGATGGCTAAGTTCGACACTATCTACCGTGGCGAAGAGGATCCCCGGAAGCACCAGCAGCGCATCACGGCCAGCGCTGCCTCCGAGCTCATCCTCAGCAAGGACCAGCTGTATGAAATGTTCCAACAGATCCTTGGCATCAAGAAATTTGAGCATCAGCTGCTCTACAATGCCTGCCAGctggacaACCCAGATGAGCAGGCTGCGCAGATCAGACGAGAACTCGACGGGCGCCTTCAGATGGCTGATCAGATAGCGAAAGCTGGTAAGTTCCCCAAATTCGTGTCGAAGGACATGGAGGCGCTGTACATCGAGGAGCTGAAGTCGTCAGTGAACCTGCTCATGGCCAATCTGGAGAGCATGCCTGTGTCTAAAGGAGGAGAGTTCAAGCTGCAGAAACTGAAGAGAGGCCACAACACGTCTATCATCGACATGGGCCAGGAGGACGAGAACCAGCTCTCCAAGTCTGACGTGGTTCTTTCCTTTACGCTAGAGGTTGTGATCATGGAAGTTCAGGGTTTGAAGTCACTCGCTCCCAACCGCATCGTCTACTGCACCATGGAGGTAGAAGGAGGCCAGAAACTCCAGACTGACCAAGCCGAAGCCTCCAAACCCACTTGGGGAACTCAAGGAGACTTCACCACCACACACCCGCTCCCTGCTGTCAAGGTGAAACTGTTCACTGAGAGTACCGGAGTGTTGGCACTGGAAGATAAAGAGCTGGGacggGTTGTTTTACATCCGACTCCCAACAGCCCCAAGCAGTCCGAGTTACACAAGATGACGGTGTCTAAAGGCTGCGCGGACAGCGACCTGAAGATTAAACTTGCTGTACGCATGGACAAACCTCAGAACATGAAACACTGTGGATACCTTTGGGCCATCGGAAAAAACGTGTGGAAGAGGTGGAAGAAGAGGTTCTTTGTCTTGGTGCAGGTCAGTCAGTACACCTTCGCCATGTGCAGCTACAGAGAGAAGAAGGCAGAACCTGTGGAGCTTCTCCAACTGGATGGATACACTGTGGACTACACCGACCCTCAGCCAGGTTTGGATGGAGGCAGGGCTTTCTTTAACGCTGTGAAAGAAGGCGACACTGTGATCTTTGCCAGCGATGACGAGCAGGACCGGATCCTGTGGGTTCAGGCCATGTACAGAGCCACGGGCCAGTCGCACAAACCCATCCCTCCTACACAGGTCCAAAAACTCAACGCTAAAGGAGGAACAGCACCGCAGCTGGACGCACCAATCTCACAGTTCTACGCAGACCGTGCGCAGAAACATGGCATGGACGAGTTCATCTCAGCGAATCCCTGTAACTTTGATCACGCCTCACTGTTTGAGATGGTGCAGCGCCTCACGTTGGACCACAGACTAAACGACTCCTACTCCTGCCTGGGTTGGTTTAGTCCTGGTCAGGTGTTTGTGCTGGACGAGTACTGTGCCAGAAACGGTGTACGGGGTTGTCACAGACACCTGTGTTACCTGAGCGACTTGTTAGAGAGAGCTGAGAACGGAGCGATGATCGACCCCACGCTGCTTCACTACAGCTTTGCGTTTTGTGCTTCACACGTGCACGGCAACAGGCCTGATGGAATCGGCACCGTCACGGTGGAGGAACGCGAACGCTTCGAGGAGATTAAAGAACGACTGCGAGTGTTGCTCGAAAACCAGATCACACATTTCAGGTACTGTTTTCCATTTGGACGGCCAGAGGGAGCTCTGAAGGCTACACTCTCTCTGCTGGAGAGGGTGTTGATGAAGGACATCGTAACTCCAGTGCCCCAGGAGGAGGTGAAGGCCGTGATCAGGAAATGTCTGGAACAGGCGGCGTTGGTCAACTACCAGCGTTTGTCTGAGTATGCCAAAGTGGAAGggaaaaagagagaaatgtatGAGCATCCTGTCTACTGCTTGGCGTCACAAGTGATGGATTTAACCATTCTTGAGAAATCTCAGAAGGATCAGAAGGATCCAGAGAATGTAGGCCGCTTAGTTACGCCTGCCAAAAAGCTGGAGGACACTCTCCGCCTGGCCGAGCTGGTCATCGAGGTGCTGCAGCAGAATGAGGAGCATCACGCAGAGGGTAAAGAGGCGTTTGCATGGTGGTCTGACCTCATGGTGGAACATGCAGAGACGTTTCTGTCCCTCTACGCTGTGGACATGGACGCAGCGCTGGAAGTCCAACCTCCAGACAGCTGGGACAGTTTTCCTCTCTTCCAGCTGCTCAATGACTATCTGCGGCTCGACTATAACCTGTGTAACGGGAAATTCCACAAGCACCTGCAAGATCTCTACGCGCCTCTAGTGGTGAGATATGTGGACCTGATGGAGTCCTCCATCGCCCAGTCTATACACCGGGGCTTCGAGCGTGAGTCCTGGGAGCCTGTAAAGAGTTTAACAAGTAATCTGCCCAATGTCAGCCTTCCAATTGTGAACCTCCAAATGCCCAAAGTTCCAAATCTACCGGTGTCAGTTAATCTGCCACCAGTGCAAATACCTCTCTTTTCCACCCCCAGCTGGATGACGGCCATATCGGACGCAGATAACGGTTCGGGGACGTCAGAGGATCTGTTCTGGAAGCTGGACGCTCTGCAGACGTTCATCAGAGACCTGCACTGGCCCGAGGAGGAGTTCGCTAAACACCTGGAGACGAGACTTAAACTCATGTCCAGCGACATGATCGAGTCGTGCGTGAAAAGgACAAGAGTGGCGTTTGAAGTGAAGCTGCAGAAGAGCAGTCGGACCACAGACTTCCGCGTCCCTCAGTCCATCTGCACCATGTTTAACGTCATGGTGGACGCCAGAGCCCAGTCTGCCAAACTGTGTGCCATGGAGCTCGGCCAGGagCGACAGTATCACTCTCAAATCGACAACCTCATCGAGGAGACGGTGAAGGAGATGATTACTTTACTAGTGGCAAAGTTTGTGGTGATTTTGGAGAGCGTTCTGGCCAAGCTATCTCGTTACGATGAGGGCACGCTGTTCTCCTCCTTCCTCTCATTTACTGTCAAAGCCGCCTCAAAATACGTGGATGTACCTaaaCCCGGCATGGATGTAGCCGACGCCTACGTGGCGTTCGTCCGCCACTCTCAGGACGTCTTGCGGGATAAGGTCAATGAGGAGATGTACATAGAAAGATTATTTGATCAATGGTACACTAGCACGATGAACCTACTGGGTACCTGGCTAACAGATCGCATGGACCTGCAGCTTCACCTGTACCAGCTGAAAATCCTCATTCGAATTGTAAAGAAAAAATACCGCGACTTCCGTCTGCAAGGCGTCTTAGACTCTACTCTGAACAGCAAAATGTACGAGACGGTGAAGAACAGGCTGATGCTGGAGGAGGCCACGGCGTCTGTGAGGGACGGAGGAATGCAGGGCATCTCCATGAAGGACAGCGATGAAGAAGATACTTAGGCGCCACGTGGAGCGGCCATGTTTGGTGTACTCTGCCGAAGCGATGCATGTACTCCGTTCGTCATGCTTCCTTAATAATTTTTACTTTCAGGTCATACAATTGATAATGGGAGCCAATGTTAATTACTgatatgagaaaaacaaaaaaaatctatatttaatGTCCGTCAGAAGATTGTTGTAACAAACAGGGGGGGAAATCGACTTGAAATTGGTGTTTTACAAGTAATAATGTCCAAACTGCGTTCCTAAATGTTTCGAAGCAATATGGCGTACTACTTGTAAGCGATGTTTTGCGTCAGATGGTTAGGAATGTATGCCCTGTTGTGTCCCTGTTCAATGCACACGTGTACGGCGCTTCTTATGTGTACTGTAAATATATGAATGGTACATAATTGTGCATAGTCTcctttggagttttttttttcaactgtatGCCAAATGAATTGATTATGTTGTATTTATCTGGTTTGGGGTGTGTAAAGGTAGTGTTTATATTCCATTTACACAATAATTGAATAGTCAATCAATAATCACATTATCTCTGGTACCACAAGCCATCTGGAAcggccatctttttttttaatgagttagTAGATATTTTAGAAATGCAATATTAACTACATTATGATATACTTTGACTAATACGGACAATACATTTATGTTTTACGTCATTTTGTGATTTATAAATATGctttttacatattttctcTATTAGCGAGTATGTAATCTAAAGCCTCACTTTTCATACCATTCctgcaaatgatttttttttctaccttgCTCTCAGCATTGTTGCTTTTCATCATATCTGATGCTGTGTATTGCCCTTGGTGCAGAAGGTCATCCATGttatctaaaaaatatatat

Function

GO: NA

KEGG:

id description
K19933 CADPS; calcium-dependent secretion activator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580239.1 lncRNA upstream 1506 4150542 ~ 4156726 (+) True LOC117599910
TU357872 lncRNA upstream 114366 4043090 ~ 4043866 (+) True G301857
TU357867 lncRNA upstream 128962 4029009 ~ 4029270 (+) True G301852
TU357820 lncRNA upstream 224882 3933107 ~ 3933350 (+) True G301805
TU357807 lncRNA upstream 239701 3918330 ~ 3918531 (+) True G301792
TU357949 lncRNA downstream 15794 4294467 ~ 4294733 (+) True G301921
TU357951 lncRNA downstream 16635 4295308 ~ 4295516 (+) True G301923
TU358359 lncRNA downstream 453480 4732153 ~ 4733061 (+) True G302281
TU358451 lncRNA downstream 542019 4820692 ~ 4820899 (+) True G302360
XR_004580245.1 lncRNA downstream 558479 4837152 ~ 4878375 (+) True LOC117599916
XM_034314052.1 mRNA upstream 73217 4080436 ~ 4085015 (+) True thoc7
XM_026935169.2 mRNA upstream 116140 4037772 ~ 4042092 (+) True psmd6
XM_026935719.2 mRNA upstream 146464 3964667 ~ 4011768 (+) True prickle2b
XM_026935677.2 mRNA downstream 10899 4289572 ~ 4292368 (+) True fezf2
XM_034314381.1 mRNA downstream 11085 4289758 ~ 4292368 (+) False fezf2
XM_034314204.1 mRNA downstream 55492 4334165 ~ 4380659 (+) True fgd5a
XM_026935399.2 mRNA downstream 111679 4390352 ~ 4418766 (+) True prkcdb
XM_026935400.2 mRNA downstream 111679 4390352 ~ 4418766 (+) False prkcdb
TU355411 other upstream 2659745 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 2660605 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 3293344 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 3313421 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 3637345 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 188404 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 2385401 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 4222965 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 4222965 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 6233998 10512671 ~ 10513270 (+) True G305515

Expression Profile