RNA id: TU357949



Basic Information


Item Value
RNA id TU357949
length 267
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G301921
representative True

Chromosome Information


Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4294467 ~ 4294733 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CTGAAACGTACGTCATCATGAAATTACACCTTATAACCACatgacatcatttttattaaattaattcaaatgtaaacaataaatattagaaaatactATACCTATACTActtaatactaatactatacTAGCTACTATACctattttataataatctttAAAGTCATCTATATGTCCACATTCCACATCATCCACATTCCAGTACAAACACATCTGGACTGAGACACGAGTCATGACACACAGCTGGGCCTGATCACAGCCTCCCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU357907 lncRNA upstream 15818 4272096 ~ 4278649 (+) False cadpsa
TU357901 lncRNA upstream 84206 4132280 ~ 4210261 (+) True G301881
TU357911 lncRNA upstream 125821 4138782 ~ 4168646 (+) True G301885
XR_004580239.1 lncRNA upstream 137741 4150542 ~ 4156726 (+) True LOC117599910
TU357872 lncRNA upstream 250601 4043090 ~ 4043866 (+) True G301857
TU357951 lncRNA downstream 575 4295308 ~ 4295516 (+) True G301923
TU358359 lncRNA downstream 437420 4732153 ~ 4733061 (+) True G302281
TU358451 lncRNA downstream 525959 4820692 ~ 4820899 (+) True G302360
XR_004580245.1 lncRNA downstream 542419 4837152 ~ 4878375 (+) True LOC117599916
TU358624 lncRNA downstream 880837 5175570 ~ 5217425 (+) True G302530
XM_026935677.2 mRNA upstream 2099 4289572 ~ 4292368 (+) True fezf2
XM_034314381.1 mRNA upstream 2099 4289758 ~ 4292368 (+) False fezf2
XM_026935742.2 mRNA upstream 15794 4158232 ~ 4278673 (+) True cadpsa
XM_034314052.1 mRNA upstream 209452 4080436 ~ 4085015 (+) True thoc7
XM_026935169.2 mRNA upstream 252375 4037772 ~ 4042092 (+) True psmd6
XM_034314204.1 mRNA downstream 39432 4334165 ~ 4380659 (+) True fgd5a
XM_026935399.2 mRNA downstream 95619 4390352 ~ 4418766 (+) True prkcdb
XM_026935400.2 mRNA downstream 95619 4390352 ~ 4418766 (+) False prkcdb
XM_034314452.1 mRNA downstream 137792 4432525 ~ 4449377 (+) True sfmbt1
XM_026935463.2 mRNA downstream 156307 4451040 ~ 4469196 (+) False LOC113539599
TU355411 other upstream 2795980 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 2796840 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 3429579 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 3449656 842980 ~ 844811 (+) False LOC113539702
XR_004580271.1 other upstream 3773580 518567 ~ 520887 (+) False cdkn1a
TU358141 other downstream 172344 4467077 ~ 4469174 (+) False LOC113539599
XR_003403967.2 other downstream 2369341 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 4206905 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 4206905 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 6217938 10512671 ~ 10513270 (+) True G305515

Expression Profile