Item | Value |
---|---|
RNA id | TU357949 |
length | 267 |
lncRNA type | inter_gene |
GC content | 0.33 |
exon number | 1 |
gene id | G301921 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047614.1 |
NCBI id | CM018560.1 |
chromosome length | 21552800 |
location | 4294467 ~ 4294733 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU357907 | lncRNA | upstream | 15818 | 4272096 ~ 4278649 (+) | False | cadpsa |
TU357901 | lncRNA | upstream | 84206 | 4132280 ~ 4210261 (+) | True | G301881 |
TU357911 | lncRNA | upstream | 125821 | 4138782 ~ 4168646 (+) | True | G301885 |
XR_004580239.1 | lncRNA | upstream | 137741 | 4150542 ~ 4156726 (+) | True | LOC117599910 |
TU357872 | lncRNA | upstream | 250601 | 4043090 ~ 4043866 (+) | True | G301857 |
TU357951 | lncRNA | downstream | 575 | 4295308 ~ 4295516 (+) | True | G301923 |
TU358359 | lncRNA | downstream | 437420 | 4732153 ~ 4733061 (+) | True | G302281 |
TU358451 | lncRNA | downstream | 525959 | 4820692 ~ 4820899 (+) | True | G302360 |
XR_004580245.1 | lncRNA | downstream | 542419 | 4837152 ~ 4878375 (+) | True | LOC117599916 |
TU358624 | lncRNA | downstream | 880837 | 5175570 ~ 5217425 (+) | True | G302530 |
XM_026935677.2 | mRNA | upstream | 2099 | 4289572 ~ 4292368 (+) | True | fezf2 |
XM_034314381.1 | mRNA | upstream | 2099 | 4289758 ~ 4292368 (+) | False | fezf2 |
XM_026935742.2 | mRNA | upstream | 15794 | 4158232 ~ 4278673 (+) | True | cadpsa |
XM_034314052.1 | mRNA | upstream | 209452 | 4080436 ~ 4085015 (+) | True | thoc7 |
XM_026935169.2 | mRNA | upstream | 252375 | 4037772 ~ 4042092 (+) | True | psmd6 |
XM_034314204.1 | mRNA | downstream | 39432 | 4334165 ~ 4380659 (+) | True | fgd5a |
XM_026935399.2 | mRNA | downstream | 95619 | 4390352 ~ 4418766 (+) | True | prkcdb |
XM_026935400.2 | mRNA | downstream | 95619 | 4390352 ~ 4418766 (+) | False | prkcdb |
XM_034314452.1 | mRNA | downstream | 137792 | 4432525 ~ 4449377 (+) | True | sfmbt1 |
XM_026935463.2 | mRNA | downstream | 156307 | 4451040 ~ 4469196 (+) | False | LOC113539599 |
TU355411 | other | upstream | 2795980 | 1496860 ~ 1498487 (+) | False | LOC117599925 |
TU355413 | other | upstream | 2796840 | 1496860 ~ 1497627 (+) | False | LOC117599925 |
TU355179 | other | upstream | 3429579 | 863338 ~ 864888 (+) | False | fbxo42 |
TU355161 | other | upstream | 3449656 | 842980 ~ 844811 (+) | False | LOC113539702 |
XR_004580271.1 | other | upstream | 3773580 | 518567 ~ 520887 (+) | False | cdkn1a |
TU358141 | other | downstream | 172344 | 4467077 ~ 4469174 (+) | False | LOC113539599 |
XR_003403967.2 | other | downstream | 2369341 | 6664074 ~ 6779358 (+) | False | cpne5b |
XR_004580199.1 | other | downstream | 4206905 | 8501638 ~ 8558911 (+) | False | nfasca |
XR_004580200.1 | other | downstream | 4206905 | 8501638 ~ 8558788 (+) | False | nfasca |
TU362120 | other | downstream | 6217938 | 10512671 ~ 10513270 (+) | True | G305515 |