Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026935462.2 |
| length | 647 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 3 |
| gene id | LOC113539599 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 4451040 ~ 4469196 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU357951 | lncRNA | upstream | 171543 | 4295308 ~ 4295516 (+) | True | G301923 |
| TU357949 | lncRNA | upstream | 172326 | 4294467 ~ 4294733 (+) | True | G301921 |
| TU357907 | lncRNA | upstream | 188410 | 4272096 ~ 4278649 (+) | False | cadpsa |
| TU357911 | lncRNA | upstream | 298413 | 4138782 ~ 4168646 (+) | True | G301885 |
| TU358359 | lncRNA | downstream | 262957 | 4732153 ~ 4733061 (+) | True | G302281 |
| TU358451 | lncRNA | downstream | 351496 | 4820692 ~ 4820899 (+) | True | G302360 |
| XR_004580245.1 | lncRNA | downstream | 367956 | 4837152 ~ 4878375 (+) | True | LOC117599916 |
| TU358624 | lncRNA | downstream | 706374 | 5175570 ~ 5217425 (+) | True | G302530 |
| TU358652 | lncRNA | downstream | 958011 | 5427207 ~ 5471492 (+) | False | ptprga |
| XM_026935461.2 | mRNA | upstream | 4860 | 4451040 ~ 4462199 (+) | True | LOC113539599 |
| XM_034314452.1 | mRNA | upstream | 17682 | 4432525 ~ 4449377 (+) | True | sfmbt1 |
| XM_026935399.2 | mRNA | upstream | 48293 | 4390352 ~ 4418766 (+) | True | prkcdb |
| XM_026935400.2 | mRNA | upstream | 48293 | 4390352 ~ 4418766 (+) | False | prkcdb |
| XM_034314204.1 | mRNA | upstream | 86400 | 4334165 ~ 4380659 (+) | True | fgd5a |
| XM_026935455.2 | mRNA | downstream | 197680 | 4666876 ~ 4673687 (+) | True | gnl3 |
| XM_026935468.2 | mRNA | downstream | 211834 | 4681030 ~ 4683551 (+) | True | spcs1 |
| XM_026935208.2 | mRNA | downstream | 225963 | 4695159 ~ 4740849 (+) | True | camk1b |
| XM_026935407.2 | mRNA | downstream | 741448 | 5210644 ~ 5471561 (+) | True | ptprga |
| XM_026935689.2 | mRNA | downstream | 1004694 | 5473890 ~ 5486512 (+) | True | cse1l |
| TU355411 | other | upstream | 2968572 | 1496860 ~ 1498487 (+) | False | LOC117599925 |
| TU355413 | other | upstream | 2969432 | 1496860 ~ 1497627 (+) | False | LOC117599925 |
| TU355179 | other | upstream | 3602171 | 863338 ~ 864888 (+) | False | fbxo42 |
| TU355161 | other | upstream | 3622248 | 842980 ~ 844811 (+) | False | LOC113539702 |
| XR_004580271.1 | other | upstream | 3946172 | 518567 ~ 520887 (+) | False | cdkn1a |
| XR_003403967.2 | other | downstream | 2194878 | 6664074 ~ 6779358 (+) | False | cpne5b |
| XR_004580199.1 | other | downstream | 4032442 | 8501638 ~ 8558911 (+) | False | nfasca |
| XR_004580200.1 | other | downstream | 4032442 | 8501638 ~ 8558788 (+) | False | nfasca |
| TU362120 | other | downstream | 6043475 | 10512671 ~ 10513270 (+) | True | G305515 |
| XR_004580251.1 | other | downstream | 6295078 | 10764274 ~ 10773442 (+) | False | LOC113539694 |
