RNA id: XM_026935407.2


Basic Information

Item Value
RNA id XM_026935407.2
length 7252
RNA type mRNA
GC content 0.48
exon number 29
gene id ptprga
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 5210644 ~ 5471561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACGCATGTTGCACTCTTTGTCAGTGCTTTCTTTAGAGCAGGGTAGTGTAGTAGAAACGTGCGATTTCGGATGTAGGatgtttccttaaaaaaaaaaaaaaaaagtgcacgcGATTCCTCGGCGCTAGGATCCGGCGGCGCTCgctctctcgcgctctctctctctctctctctctctctctctctctctctcccctttttcTCCCGAGCCTGTTTGAAAGTCTCCGCCACACTTCGGCTACTTCCTGGATGGCGGAATGGAGAGCTTCCAGCGCCGCTGCTCTGACTCTGCCGTCTCTTGTGTCCTGGCGTGAAAGCGTCGCGCGCTTGACTCCGCGCGCTTCCTTGGCTTGGCCGCACGAGCCGCGAAAATCTCGTGTCCACTCCAGCTTCCACGCGCGCCGTCATGTTTTTACCTCAGGAGTAACGGTCTGAGGGGCtttaagaaaagagaaagaaagagaggaggaggagaagaagaagaagaggaggaagaaaaactGTTTCCTGGACGAACTTAACAGAAAATTCCTGCGAGTGATTCGTGAAGCTTCCTCCTGGcgtaaaaaaaacagttacagtttgttttttttcgcctttgtttgtttgtttgtttgtttgtttgttttaaaccgGACGTTTTTTAGGATAACTCCAGTCAACAGTTGCTCCGTGGCCGGCTGTCGATGTGCGCTGTGCCATGCCGAGGCTTCAGCAACCGGGTCGCTGCTGCTGGATTCTGGCTTTAACGCTGGCAGCCTGCGCGCTCCTCCGGGCCCACGCGCATCCCGCGCTGTCCGGAGGCGATCAGGTGGAACGGCATGGCTGGGCGACCGGGGACAGACACCGCAGAGCTGCTGAGGAACCTTACTGGGCATACTCAGGGGCATATGGACCAGAGACGGGATGGGCGTCTGCTTATCCAGAGTGCCAGGAGAGGAACCAATCGCCAATCAATATAGCCGACCAGGATACCAGGGTCTCGATGGAATACCAGGAGCTCCTCCTGGACGGCTTTGAAGCAGAATCGTCTAACAAGACGTCAATGAAGAACACAGGCAAAACTGTGGCCATCCTGCTGAAGGACGACTACTTTGTGCAAGGTGCGGGTCTGCCGGGTCGCTTTAAAGCTGAGAAGGTGGAGTTCCACTGGGGCCAGAGCAACGGTTCAGATGGCTCAGAGCACAGCATCAACGGCAGGAGGTTCCCCGTTGAGatgcagATCTACATGTACAACTCGGACGATTTTGACAGCCTTAACGCAGCCATCAGGGAGAAGCGGGTCATCGCCGCTATGGCCGTCTTCTTTCAGgttggaCAGAAGGACAATCCTGCGGTAGACCCTATAATCCACGGTCTGAGAGGAGTCGTGCATCACGagaaagagacattTCTGGAGCCTTTCGTTCTGAGGGACCTGTTGCCGTCCTCTATTGGGAGTTATTACCGGTATGTTGGCTCTCTCACTACTCCACCCTGCAGTAAAGTAGTGGAGTGGATCGTCTTCAGCCGGCCCGTCTTCCTGTCCTACAGACAGTTGGAGGCATTCTACTCCATCTTCACCACCGAGCAGCAGGACCATGTGAAGTCAGTGGAATACCTGCGGAATAACGTCCGCCCACTGCAGAGTCTGGACAACCGGGAAGTGTACAAGTCCGCCGTCAAAGACGCCTGGCTGCCCTATCTGACTGATCCCTACGGCACTGAGTCCTCCAAAGccTGCAGCAGCGCTCCCATCAACATGCAAGTTCAGCCTCTGAATAAAACAGCCCTGGTGGTGCGATGGTCCCGCCCCGAGATCACCTACGACCCGCCCATTGTCAGCTACCTCATCTCCTACAGTTGGACCCGAAACGACGAGGAGTACGAGGAGACGTACGTCAAAGGCAGTGACCAAAAACTGgaggCCGTTATCAAGCCAGTTTCACCAGACGTGCTGTATCTCTTCCGAGTCCAGGCTGTGTGCTTGAACGACAAACGCAGTGACTTCAGCCAGAGCATGCTGTTCAGagCAAATACCACCAGAATATTCGAAGGGACGAGGATAGTGAAAACAGGAATGCCCACGGTGTCTCCCGCATCCTCGGCCGACATGGCTCCCATTAGCTCCGGCTCATCCACCTGGACCTCCTCGGGCCTGCCCTTTTCCTTCGTCTCCATGGCGACTGGCATAGGCCCCTCCTCCAGCGGTAGCCAGGCCACGGTGGCATCCGTGGTAACCAGCACTCTCCTGGCAGGGCTGGGCTTCAGCGGCGGCGTCATCTCCTCCTTCCCCAGCTCAGCTTGGCCCAGTCTCCGCCCCCCAACCCAAACACCACCCACCACAGCAGAACAGGCTCCGCCCACCCCAGAAAACTCCCAGAACCAAGGCTCAGATGACAACGCCGGAGGAGAGAAGACCGTCAAGGCCGAAGGTGAGGAGGGTGAGAGGGACGgcgaggaagaggaagaaaaggatgaagaagaagataaaGGAGCAGAGGGCAAAACAGTGAAGAACGCCCCAGATGATGTTCAGACGCAGGTGAATAGTTCAGCAGACCAAGAGCCTCCCAAAACAGCGCCCGACTCCACCGCCAaggagaaaggagggagaaagaaggaggaggaCGGAGCGACGGCATCCACTGTACCACAGGACACGCAGACAGAAAGAACAGAAGATGAGGAGGAAGCCACTGTGACCCCCAGTACAGAGCCTGGGATTGTGGGAAATGACAGCGTGGTGCTCCAGTCCCCAGAAGCCCCTCCAAAGGGTGGGAAAGGCAGCATGGGGGACAGGAGTCAGTGGCCTTTCTCCTTTCATACAGagcgGACTATAGTCTCCAATATGAGGCCAGTTCCCGGTTCAGGCAGGATGGAGTGGATCATTCCTCTAGTAGTGGTGTCTGCTCTCACCTTCCTCtgcctcatcctcctcctcgcTGTCCTCGTCTACTGGAgGAGGTGTTTCCAGACTGCTCATTTCTATGTGGAGGACAGCAGCTCTCCACGAGTGGTGCCCAATGAGAGTATTCCAGTCATCCCCATCCCAGACGACATGGAGGCCATCCCTGTCAAACAGTTTATTAAGCACATATCAGATCTGTATGCAAACAACCAGCATGGATTCTCTGAAGATTTTGAGGAAGTACAGCGTTGCACGGCCGATATGAAGATCACATCAGAACATTCAAATCATCCAGACAACAAGCACAAGAACAGATACATCAACATCGTAGCGTATGATCACAGTCGAGTGAAGCTGAGGCCATTAGCCGGCAAGGATTCCAAACACAGTGACTACATCAATGCTAACTATGTGGACGGTTACAACAAGCCGAAGGCATACATTGCTGCTCAGGGTCCCCTCAAGTCCACCTTCGAGGACTTCTGGAGGATGGTGTGGGAGCAGAACACAGGCATCATTGTCATGATCACCAACCTGGTGGAGAAAGGACGAagAAAGTGTGATCAGTACTGGCCGACAGAGAACAGCGAGGAGTACGGTAACATCGTGGTGACGCTGAAGAGCAGCAAGGTGCACGCCTGCTACACAATCCGTCGCTTTACCATCCGCAACACCAAAGTCAAGAAGggtCAGAAGGGCAGTGTAAAGAGTCGTCAGAGCGAGAGAACAGTAATCCAGTATCACTATACACAGTGGCCTGACATGGGCGTTCCTGAGTACACACTGCCTGTGCTCACCTTCGTCAGGAAATCTTCTGCAGCACAGACGCCCGAGATGGGCCCCATGCTTGTCcactgcagTGCTGGCGTGGGCAGAACAGGAACCTATATCGTGATTGACAGCATGCTGCAGCAGATTAAGGATAAAGGCTCTGTCAACGTGCTGGGTTTCCTTAAACACATACGCACACAGAGGAACTACCTGGTTCAAACTGAGGAGCAGTACGTCTTCATTCATGATGCCTTGTTGGAGGCCATACAGGGAAAGGAGACAGAGGTTTTGTCCAGCCAGCTGCACAGTTATGTCAACAGCATCCTGACCCCTGGCCGGAGCGGCAAAACCCGGCTCGAGAAACAGTTCAAGCTGGTGACTCAGTGTAATGCCAGATTTGCAGAGTGTTTCAGCGCACAGAAAGACTGCAACAAGGAAAAGAACCGCAACTCCTCCGTCGTTCCATCGGAGAGAGCGCGTGTCGGTTTGGCTCCACTTCCTGGAATGAAAGGCACCGATTACATCAATGCCTCTTACATCATGGGTTACTACCGCAGCAACGAGTTCATCATTACCCAGCATCCTCTGCCTCACACCACTAAAGACTTCTGGAGGATGATCTGGGACCATAATGCGCAAATCATCGTCATGCTTCCCGACAACCAGGGGCTGGCTGAGGATGAGTTTGTTTACTGGCCGAGTCGAGAGGAAGCCATGAACTGTGAAGCCTTCACCGTCACGCTCATTAGCAAGGACAGACTCTGCTTGTCCAACGAGGAGCAGATCATCATTCATGACTTTATCCTGGAGGCTAcacagGACGATTACGTGCTGGAGGTGCGTCATTTCCAGTGCCCGAAATGGCCCAACCCGGACGCGCCCATCAGCAGCACGTTTGAGCTCATCAACATCATTAAGGAAGAGGCCATGACCAGAGACGGACCCACCATAGTGCACGACGAGTATGGAGCGGTATCAGCGGGTATGTTCTGTGCCCTCACCACTCTGAGTCAGCAGCTGGAGAACGAGAACGCTGTTGGAGTCTATCAGGTGGCCAAGATGATCAACCTCATGAGACCTGGTGTCTTCACCGACATTgaGCAGTACCAGTACCTTTACAAGGCTATGCTTAGTCTGGTGAGCACTAAAGAGAACGGAGCTGGTCCTGTGTCCATAGAGCGAAATGGCAGTATGGCCCTGTCTGACGAATCGGACCCTGCCGAGAGCATGGAGTCTCTCGTctgaagctcacacacacacatacacacacacacacacacatacacgccaGGAGGCGCTTAACTTACTTTGTAAAACTTCAAGGACTAAGACAGACTTTTTTTCTGAGGCCTTTTTTGCCAGAACTCTTGGTTAAACGAATAACCCAATTACTTTTTTACACTGATAAAAAgttttttgatatttattttttttttcgccaTTTTATGTCTTAATGTTATCCTACTGAACATTTGCACCTCTGTTTTTGAGTTCAcgacaacaaacaaaacacacttctGTCTAGTTTGCACTATGAAAATATCAGTGTTACTGCCTACTTCAGTCCTACGCTCtctactttttattatttttttttattattttcacaacAACCAGGTTTTGACATTCCATCATGAACCTACACTCGACAGCTTGGAAACAATTGtgaaaagatttaaagattCAAGACTCCCACTCTcatataaaatcaaaatcttaaaaaacaaaaacagaagttCATTAACATTCAGAGTCATCGACAAGCAATATTGGATTTCTGCGCTTAATTTCAACACCATAAAggattcctttctttctttctttttttttttttgcattatgcatCTATTAAGCCTGTTAGATTCATTAACTTTCTGCAGGTGGTATTAAAACAGCTACTGTgaactttattcttttttttaatttttgaatgATTCATATTAtgcttttaatatatatatgaatatatcgTATCTCATTATAACTTGTggttttgtaaaaatgttaactGTCATAAGCAACTGGTTCCTTGCAGGCTTGGTTCAATGGTTTTGCCTCATGCTTTTCAATAGCAGTCCACGTCCTCTCTAGCACCCCCTGCTggttttcatttctttactCTGCAGGCTGCTGCTAAATGATCTGATTTCGCTTGAATGGGGAAATCCTAGTCATTCTCGCTTTACTGTTGGCTATTTAGTTTATAATTTACTCTCCATTCAGTTCTGCATACGTGATTTGCATCAGTCAGGTCTCGATGCCTTTTGTAAAGTCTGATCTCATCTCTGCAGCTGTGtgatgtgagagtgtgtgtcgtgtgtggtGCTGAGTCAATTTACTcgacatatatataaaatattccagGAGGAAATGCAAACTGTACACAGTTCATGTTGCTCACGTCCTGCCTCTGTGTCTCAAACTTCTTTCTTATCACTTATTTCATAAACATCATGAAAATCAAGaccaggagtgtgtgtggacggTGTGTATCAtgtcacacagcagcacaatgatGGCCTTGTTAATGCACCAGTTACCCAACAGCTGCACGAGGAACATTTGATTTGTCAAGTTTTACCAAAGACTTCAACTCAACATCTCATTTCCATAGTAGCAAATTTGCAAtctatttgtgtctgtgtcagATATTgcagaatggtgtgtgtgtgtatgaatttcATGAGGCTGAGGTCCCAGCTTGGTTCATTTAGCACTTTTCCAATTTTATGAAAACGATCACCAGAGACACAgtaaaatgcagatttttttttgtgaaaatgttgaaatatttgtgcTTTTGCGATGACAAGTTCAAGACTTTGATACCACATCCTTAAAAGGCACTGACATTGTTAATTTTGTGtcctttacaaaaaaaaaactgaactgcATTCTTGATGACATCTTGACTTTGCGTTGTAATTTTTGTTCGCCCTTTTTCCTGATGTCCATCTTCTTGTTCAGCTTGAGTGTCGAGCCTTTGCTTATATGCTGCAATTTAAACAGGAATTTGTAtctttgtcttattattttctttgaaTGTACATATTTTTGCTTATCTGTCCATCAGTTTTCTTTGCATTATCCCCTGGTGTATGtttatagaattttattttcatataaagcCGTCTCAGAATCTCAGCTCTCTGTATGttttgtgcaaaaacaaaaagtgtaaaagagagagagagagagagagagagaataatccAGTGGTTCATTCACCGAGTGACTGACGTCTCATGCCTCATATACCACAAGGCAGTGATTGTGATATTCTCTTATTattttgttgattgtttttctttaaatgggATTATAGGTTGTTTTTTATTCTGAGGGTGTCATAGGCAAGCTCCACTGATTAAGTTTCCCTCATTCACTTCTGTAATGCAGGCGGGTGTTGATCAACATCATATACCCTGTTTTTGGCATCTGGAATACCACAAAACGAacgaaaaaaatgtgtttttcttgttttgttgaaAGCTATATCAAAGCATTCTATTATAgtgttatttaatatgtaaattgTATTgctatacataaaataaaatatgggtTTTGATGTACTTTAAGCATATCTA

Function

GO: NA

KEGG:

id description
K16667 PTPRG; receptor-type tyrosine-protein phosphatase gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580245.1 lncRNA upstream 332269 4837152 ~ 4878375 (+) True LOC117599916
TU358451 lncRNA upstream 389745 4820692 ~ 4820899 (+) True G302360
TU358359 lncRNA upstream 477583 4732153 ~ 4733061 (+) True G302281
TU357951 lncRNA upstream 915128 4295308 ~ 4295516 (+) True G301923
TU357949 lncRNA upstream 915911 4294467 ~ 4294733 (+) True G301921
TU358674 lncRNA downstream 50973 5522534 ~ 5565014 (+) True G302575
TU358685 lncRNA downstream 89052 5560613 ~ 5561524 (+) True G302586
TU358684 lncRNA downstream 106072 5577633 ~ 5580979 (+) True G302585
TU359310 lncRNA downstream 728885 6200446 ~ 6293749 (+) True LOC113539422
TU359311 lncRNA downstream 728885 6200446 ~ 6293749 (+) False LOC113539422
XM_026935208.2 mRNA upstream 469795 4695159 ~ 4740849 (+) True camk1b
XM_026935468.2 mRNA upstream 527093 4681030 ~ 4683551 (+) True spcs1
XM_026935455.2 mRNA upstream 536957 4666876 ~ 4673687 (+) True gnl3
XM_026935463.2 mRNA upstream 741448 4451040 ~ 4469196 (+) False LOC113539599
XM_026935689.2 mRNA downstream 2329 5473890 ~ 5486512 (+) True cse1l
XM_026935774.2 mRNA downstream 35432 5506993 ~ 5510940 (+) True LOC113539749
XM_026935775.2 mRNA downstream 35432 5506993 ~ 5510940 (+) False LOC113539749
XM_034314405.1 mRNA downstream 43147 5514708 ~ 5517420 (+) True LOC113539468
XM_026935210.2 mRNA downstream 43959 5515520 ~ 5517420 (+) False LOC113539468
TU358141 other upstream 741470 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 3712157 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 3713017 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 4345756 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 4365833 842980 ~ 844811 (+) False LOC113539702
XR_003403967.2 other downstream 1192513 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 3030077 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 3030077 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 5041110 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 5292713 10764274 ~ 10773442 (+) False LOC113539694

Expression Profile