Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU358674 |
| length | 1150 |
| lncRNA type | read_through |
| GC content | 0.37 |
| exon number | 2 |
| gene id | G302575 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 5522534 ~ 5565014 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU358652 | lncRNA | upstream | 51042 | 5427207 ~ 5471492 (+) | False | ptprga |
| TU358624 | lncRNA | upstream | 305109 | 5175570 ~ 5217425 (+) | True | G302530 |
| XR_004580245.1 | lncRNA | upstream | 644159 | 4837152 ~ 4878375 (+) | True | LOC117599916 |
| TU358451 | lncRNA | upstream | 701635 | 4820692 ~ 4820899 (+) | True | G302360 |
| TU358359 | lncRNA | upstream | 789473 | 4732153 ~ 4733061 (+) | True | G302281 |
| TU358684 | lncRNA | downstream | 12619 | 5577633 ~ 5580979 (+) | True | G302585 |
| TU359310 | lncRNA | downstream | 635432 | 6200446 ~ 6293749 (+) | True | LOC113539422 |
| TU359311 | lncRNA | downstream | 635432 | 6200446 ~ 6293749 (+) | False | LOC113539422 |
| TU359315 | lncRNA | downstream | 785178 | 6350192 ~ 6351096 (+) | True | G303181 |
| TU359549 | lncRNA | downstream | 933070 | 6498084 ~ 6502636 (+) | True | tmem167b |
| XM_034314405.1 | mRNA | upstream | 5114 | 5514708 ~ 5517420 (+) | True | LOC113539468 |
| XM_026935210.2 | mRNA | upstream | 5114 | 5515520 ~ 5517420 (+) | False | LOC113539468 |
| XM_026935774.2 | mRNA | upstream | 11594 | 5506993 ~ 5510940 (+) | True | LOC113539749 |
| XM_026935775.2 | mRNA | upstream | 11594 | 5506993 ~ 5510940 (+) | False | LOC113539749 |
| XM_026935689.2 | mRNA | upstream | 36022 | 5473890 ~ 5486512 (+) | True | cse1l |
| XM_026935414.2 | mRNA | downstream | 17502 | 5582516 ~ 5598239 (+) | True | taf4a |
| XM_026935415.2 | mRNA | downstream | 17502 | 5582516 ~ 5598239 (+) | False | taf4a |
| XM_034314281.1 | mRNA | downstream | 502040 | 6067054 ~ 6071054 (+) | True | LOC113539544 |
| XM_026935347.2 | mRNA | downstream | 502040 | 6067054 ~ 6071054 (+) | False | LOC113539544 |
| XM_034314282.1 | mRNA | downstream | 502040 | 6067054 ~ 6071054 (+) | False | LOC113539544 |
| TU358141 | other | upstream | 1053360 | 4467077 ~ 4469174 (+) | False | LOC113539599 |
| TU355411 | other | upstream | 4024047 | 1496860 ~ 1498487 (+) | False | LOC117599925 |
| TU355413 | other | upstream | 4024907 | 1496860 ~ 1497627 (+) | False | LOC117599925 |
| TU355179 | other | upstream | 4657646 | 863338 ~ 864888 (+) | False | fbxo42 |
| TU355161 | other | upstream | 4677723 | 842980 ~ 844811 (+) | False | LOC113539702 |
| XR_003403967.2 | other | downstream | 1099060 | 6664074 ~ 6779358 (+) | False | cpne5b |
| XR_004580199.1 | other | downstream | 2936624 | 8501638 ~ 8558911 (+) | False | nfasca |
| XR_004580200.1 | other | downstream | 2936624 | 8501638 ~ 8558788 (+) | False | nfasca |
| TU362120 | other | downstream | 4947657 | 10512671 ~ 10513270 (+) | True | G305515 |
| XR_004580251.1 | other | downstream | 5199260 | 10764274 ~ 10773442 (+) | False | LOC113539694 |
