RNA id: XM_026935160.2


Basic Information

Item Value
RNA id XM_026935160.2
length 1645
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC113539422
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6200446 ~ 6293749 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAATTGTCTTGAATTGTTTAACATGGCATAATTCACTCCAATGCACTTTAGCCAGACATTTCCTATGTCTTCAGGCTAAACACGCACGCGCAAGTAAATGCCACCCTGAGACTTTTATCTTGAAAACCGCTAAGATCTTGCGCTTCGACCCTGTTGTGTGCTTCTTCTTGCtttgtattaatatatatataaatgtctttttttaaatcccagcTTTTGGGGTCAGACGTGAGATGAGCACAGTAAAGTTATTAGGTGTGTGGGTAAGTCGACACTTGAAGAGTCGCTGTATTTTTGGGAACACACGAATAAATTATTATGAAGCGCCACGATGTTTACTGCGTCCTGGGAGAGAATTCGGTACGGTTTCGGAGAAAGAAACAGACGTTACTCCTGGGAGAAAAAGAGGTCTGAGAGCCGCGGATATCGCAGAAAGGCTTCGGCATGAAAAACAGAACAAGGCACATACAACAAATAAGGTTCCGGTGTCTCCTGTGCAGAGGAATGTGGCAGAACTGAAGCAGATCACTCAGCAGCTCCAATCTGTCCATCCAAATGTTTTTGCAAAAGCACTTTCTAAGAGTATTCTGTACCAAGACCAAAACCTCATCGCTGTAAATAAACCATATGGAGTCCCAGTTTACAGTACTGGAGGCATCAGGAACAGCATTGCAGAGAGTCTGCCAGTCCTGGCCAAGATTATTGATGGCATGAAAGGAGGATCTGAGCTGCACGTCTGTTACAATCTCGAGAAAGACACCACAGGCATTTTGTTCCTGGCCAGGACGGAGGAGACTGCAGAACGAATACACAATCTCATCAGATCGCATCAAGCAGAGAAGAGATACATGGTGATCACTGTTGGTGTCCCTGTTCCTTCTGAAGGTGTGATTGACATTCCCATCATTGAGAAGGAGGTCATGGGGGACCAGCATCACTTTAAGATGGCTCTGAGTCCGCTGTACAGACCGGCGGAGGAGGGAGACGGGCTGGTCCGAGTGAGAGCTCACCGGCAAGCACACAGTGCCGTCACACGCTACAAAGTCCTGGACAGCAGCTCAGGATGCAGCTTGGTGGAGCTCCAGCCAATCACAGgagtgAAACATCAGCTGCGGGTTCACATGGCGTTGGCTCTGGCTTGCCCTATTCTGGGAGATCATAAGTACGCCCACTGGAACAAGCTGGCTCCTCAgaagtTACCGGAAGGTGTGCTGCGGCGGCTTGGACTGGAGCAGAGCAAAACCCGACACCTTCCTCTCCACCTCCATGTCCGACAGATCACCCTTCCAGGGGTCAGGGGTCACGGTGACCTCACTGTGTCCTGCCCCCTTCCCAAATTCTTCACAGCAGCTATGAAAAAACTGCAAATCGAGCTACCTGAGAAGCCATAAGAGATGAGCAGCACCTCGGATATGACTGTAAACACTTTAACTGGAGACCAAGGCTTACAGGAAGTCAGAACGGTGGCATCAAATAAAGTGAGAACAGGATACACGTGAAAGACGCAACCACGCAGATCAAACTGCTTAGAGCCCGATCTACATTGACTTGACGTTGCTACAGTTTGTGCAGCATAAGAATTTTTAAGATTGTGTTATAtctgattatttaattaaaccCCAAATAAATTGAACTTCAGTGCTA

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU358684 lncRNA upstream 705269 5577633 ~ 5580979 (+) True G302585
TU358674 lncRNA upstream 721234 5522534 ~ 5565014 (+) True G302575
TU358685 lncRNA upstream 724724 5560613 ~ 5561524 (+) True G302586
TU358652 lncRNA upstream 814756 5427207 ~ 5471492 (+) False ptprga
TU358624 lncRNA upstream 1068823 5175570 ~ 5217425 (+) True G302530
TU359315 lncRNA downstream 57134 6350192 ~ 6351096 (+) True G303181
TU359549 lncRNA downstream 205026 6498084 ~ 6502636 (+) True tmem167b
TU359550 lncRNA downstream 205026 6498084 ~ 6502324 (+) False tmem167b
TU359641 lncRNA downstream 342799 6635857 ~ 6659338 (+) True G303404
TU359680 lncRNA downstream 498260 6791318 ~ 6793226 (+) True G303437
XM_026935235.2 mRNA upstream 87865 6160790 ~ 6198383 (+) True ncoa3
XM_026935350.2 mRNA upstream 182189 6099010 ~ 6104059 (+) True LOC113539546
XM_034314280.1 mRNA upstream 196211 6084440 ~ 6090037 (+) True LOC113539543
XM_034314279.1 mRNA upstream 206442 6073558 ~ 6079806 (+) True LOC113539542
XM_034314283.1 mRNA upstream 215761 6067054 ~ 6070487 (+) False LOC113539544
XM_026935525.2 mRNA downstream 12619 6305677 ~ 6308696 (+) True LOC113539620
XM_034314181.1 mRNA downstream 12619 6305677 ~ 6308696 (+) False LOC113539620
XM_034314072.1 mRNA downstream 17634 6310692 ~ 6313470 (+) True LOC113539691
XM_034314073.1 mRNA downstream 17634 6310692 ~ 6313470 (+) False LOC113539691
XM_026935518.2 mRNA downstream 25817 6318875 ~ 6334112 (+) True LOC113539617
TU358141 other upstream 1817074 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 4787761 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 4788621 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 5421360 863338 ~ 864888 (+) False fbxo42
TU355161 other upstream 5441437 842980 ~ 844811 (+) False LOC113539702
XR_003403967.2 other downstream 371016 6664074 ~ 6779358 (+) False cpne5b
XR_004580199.1 other downstream 2208580 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 2208580 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 4219613 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 4471216 10764274 ~ 10773442 (+) False LOC113539694

Expression Profile