RNA id: TU360205


Basic Information

Item Value
RNA id TU360205
length 5144
lncRNA type intronic
GC content 0.39
exon number 2
gene id G303889
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 7415415 ~ 7420578 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacacacacacacacacacatacacatacttaGACAGTGTCCCCTGCTCTCCCTTCCTAGCTGTctgctctgtgagtgtgtgtgtgtgtctttggggCTGATCTGTGGTCAGACTTGGTTGAGATGGGCACTAGAGGCGGtatcatcgtgtgtgtgtgtgtgtgtgtgtgtgtgagaaacccGCCCTCACGGTCAGTGCCACTTGCCTGACATTTGTACACGGATTTTGCGCAGGTAGTTCTCTCTTCTTACAGAAATAACACGGAGAGGATTTCCCTCATCTGTCCACTACTCCTCTTACACACGAGTGAACTTTTTTACTGCCTTTTTTCCACACGGGctatgtgtgaaagtgtgtgtgtgtgtgtgtgtgtgtgtgttgcatggcACTGCTTTTTGAAGTGCTCTCCATTCTGAAGAAATTTATTTCtatgcatttaaaatgattttttgcGCATTTTAAAGACGCGAATGCATGCTTGATAATTAATCGTGAAACAAACGTACGATTTGTCAAGTCGAATTTACGAAAGTTTACgagtttttgtccatttttaacGCTCCTAGGTTGTTCTAGGCAACGCGTTTGTGTGTAATTAAgcgctttctttctctcaacaGCAGATGCTCCCTCCTCCCCCTTCCCCTCACTCAGCATGAAGAAAGActcattatttctcttttagtaatcccagtactgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggtcaAGGGAGAAGCCTTCCCTAAGCCTACCCAAACTGACATCTCCTCTGCAGCAGCCTCATTGAGAAGATGTTTTATAGTTTCTTTCTGGCTGAGATAGAAAAAgcagagttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtttcTGTGCAAAGCGACAATTTTTCAAGCGTCGTCGTTCCATTGCCACGCAAGTGAGTGCTCTTTTCCCGGCTCCTACTGATCACTTAAACAGCACTAGAGCTAAATCAAATGGCGACTTAAAGTAATCCAACCTTCCTCTCTTTGTCTTTACCCACCATttcattcagtctttttttgtttaatcgCTGTGACAGAAGACATTTGCATCAAGACATCTTACCTTTTCAGATTAATTAGTCTCATGGCATCCTTGAATCCGTGATGAAAGGCGAGAGTGAATGCCTTAATTACAGTAGGACTGACAACCAAATtcatgttctttgttttttttcttcttcttttttattttctctttccatggcccttttttttaatagatctAAATTAAGGTGCCATGGTACGAAAGACATGGTGTTCTTCAAAGATTCGCCACTTTCCATTTAAATTACCTTTTCTCACATGACATTTGACCaactttttattaaaacctGATAAACAATGAAGAGGAGTGTTCGTCTAACAGTGCTACAAATGAATGCCTAAATTGATCAGTTTTTCTTTCCAAAATCTATCAAAACTATTAATCAGATAAAGAACTATTGCTATTGATGTTATTTTAATAGCTATATTTTAATGCAAATGATATTGTTTTGTAATATGTGAAATTATTGCATTTTGCCAGTGAGGAAAGATGAGGAAATAGTggaaataaaagcttttttttaaaaaaaaaaacaaaaacaaaaacttaaaTATCAGTATCACATTATTTTGAATTGATGTGTAGTTTCTTTTAGAAGTATACGCAATAGAAAAAAAGTACTAATGTAGCAATTAGCAACTAATTTTAAAGAATGTAGCTCACCCTAAAGACAAGTCTCACAATATCACAACAGGGAAAGGAAATAATACAGaatgaacacagacacacactgaaggTCGCTAtctttatttgctatttttctccttttgatCTGTGTGAGTCCGtactttcttcctttttttttttccgaggCTGAGCAAGGTgaaaaagggagggagggagggaaggagagagagagggaagcaGGGAGGGAAAGTTGAGTAGCTGAGGGGAGTTTGCATGGTCCAGCCACACGCTGGGGCTTTGTACAGCTCAGTAGTGAAGAACTGAAGAACTTCTGGAAGTTTCCAGAACTGCGCGCATCTCCAGGGTGCCGTTTAACCTGAGACGGCAGGGAGCGCGAGGCGTAGAAGGCTGAGCGGACGCCACTTTCTTTAGCTTTAGCCCCCAGAGCGACCCCTCTCTCTTCCACGGCTAATTTCCAAAACACAGCCTTGGCTTGTCCCCCTCCTGCTCTTTTCATACTtaactaaagaagaaaaaaaaaaagacaccctCTGTCCACGCAAGATCGTTTTTCATCAGGTCTGAGCAGGTCACATCCCTGGATCCACCTCCTAAAATCGAAAATGCAGTAAGATGGACGTCAGGGACTTCATTTATATAGACTCAGAGTCAGTTTCAAGGAGTATATAAGAGGTTAGTGGTACTTTATCACATCAGAACTTAATTTTCTTACCTTTACGTTCAGTTAGGACGCAAAAGGAAAAGGTTAGAAAAACATAACATATCGGAAATGGATAGTTATTTTGAGGTGTtgagaatttaattaaaaaaaaaaaaaagaccttcaGCCTCTGAAGGACTGATGAGCTggaacagggaaaaaaatgacaacagaGAGGAGCCCAGAAGGTGCAGGCGGTCGGATCCTGATTGATTGACGGTAAACGGAGCCCCTTTAGCGCAGTAATCAGCGTCCTTTCCCCCCAATCATTTAATAAGGGCCTAATCAGGCTAATTGGCCCGTAGCACAGCTGCATGTGCACCTGAGGAGGAGAGCGTGGACATGCGGATGGGAAGAaggatgtgagagtgtgtgcgttCGTTCACAGAGACACTGGTTTTAATTTAACGATTCCTAGTCTGATTTGTGCACTTGCAAATCAGAGAATCTGATCAGTACGTTTTGCTTGTTTGGAAATGTGGACAGCTGGAAAAATCAGCGTGTAGCAGAAAGccccttcaaaaaaaaaagcactgaaatgcTAGGTATGTGATAAATGTGCCGATTACCTGACCACCCTCTTTTAGAGATAAAGAGGCTTTGTGGAGCCTGAGAGGGGGGATTGTAGGAGAAAAGATGGGAGGAGTGGATgaaagacgaaaaaaaaaaatcacacatcacGCCTATATCTCTTCAACTATATGAAGAAACAATTACTATATTGTCTTATatgacatttataaatgtgtgtattatattatattataatatattagaagacgaatataaatatgtgtatatgtttgatTTTTGATCCTAATTAATGAACTCCTCTCTCAGATCCTCTCTCTATGGGATTTCCTCTCTGCTCTAACTGaactgatttgtttaaaaaaaaaaaatctcctgaatttttttggattatatctcaattctgatttattttttcaaggAACTGCATGTAACCTCTCTCAAGGGACTGAAAAGCTCGATCTGAAAAGCACATTTATGTCTCTGGCTGTTCTTTCTGCTCTAATTTGGCTGAAGGTTTAATCCCAATAGAGCAAGTAGTCGCCTTTTTCtaccatttctctctcacacacacacacacacacacacagtacatggGGAAAAGTTCCACGCAGCCATCTATCCTGCGATCGTATTATTACCTCACCCGCATCTCCACCCCCGGTCCCCACCCCTTCCTTTCCTCTTATTCTAGCCGGCTAATGAGAATTTgttaatgagagtgagagatcTTTTGGGTGTAGCACAATTTATCAGAAAAGGCGTATAGGtttgaaagaaaatgtgaggggaggggggaaaaaaaaagagagaacaggCCTTCAAAGAAATCCTATTCTTCTTATTTGTGAATGTTTGATGAGACATTGAAAAGTTTTGGAGCCTCGCGCTTTTTGAACAGAGCCGAGCCGAACACTAATCACTCTTCACAGAAAAATGACTTCCAACCAGATTTAATTAACTGATAAGAGGGGcttcaaattaatttttcaaGGATGTTAGATTTTGATTAAGAAACTCCTAAAAGAAATAGACGAATAATCAATTTTTTAATCAACTTACTCAAATGGTAACTGGTTAATATGGTAATTCTGGCACTTAGGGCAAATATTGTAGTGCAGCACTTTCAATGCATCCTCTTAAAGGAATTATAATATCTTTACATCTGATTATTAtggttatttaattttttttgtgtgtgtgtgtgtgtgtgtgtgtggctaccTCTCAATTTTGGTATTCTCATCCTGTATTCTCAGGGTTATATTCAAGTTGAAAAGAATGAAACTTGAatatgtcagtgtgtgaataGACTCATAAATCAATattgaagggaaattttaaagAGAATAAGGGATGTACTTGGTATAGAAGCAAGTATTAAATGTAATCCAGGTCATTCACAGTTAAAACAAATTTCCTGTGAGGCATTGTGTGAGTTAATAGCTGTTACTTTTTGATGAGTCATGATACGCATATTGAAGGGACAGATAGATTTGGAGTGATGGCGCAAGTTGAGAAAGTTTTCGACATTAAGGAGTTTcttgtgaggtttttttttttttcataactgcTTCAATGAAAAGGTCGCAACTGGCTGGAGAGGTCTTTTCAGCGTCAGATTAACTTATCTATCCTTTCTCAATCTTTTAATATTAAATCCAACTACTTTGGCCAGGTCCAATatgtaaaatgtcattaattaaCATATGCTATCTGTTTACAGGTTTAACTCTTCACCTGTTAGAAATGAATTCGTTTCCTTGAAGTGTGTACGGCTTTTTAAAAGCATGACCCGGTCTCaggtttttgtctgtttttttttttttttttttaaacgcagGCTGGCTGGCTGGCAAAATCTCAATATTGAGCGTACGTATTCAATTAGCAAAACTCATTAGCAAAAACTTGgcgtttgttgttgttttttttccccctctttctttttttctggcaCTGAATTAATGGTTTTGATATGCTAATTAGCaagtaatttaatttcaaaaggCCTCAATTAACAGCGGCATTGTGGACACGATGAAGTTAAGCAGCGTAATCTAATTTGCATTAGTAACGAGCAGGGAGTAATTAGGGGACTAATTAGACACTTCAGACAGTACTTGTGTTTACTTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU360102 lncRNA upstream 309886 7101770 ~ 7105529 (+) True G303806
TU360012 lncRNA upstream 414303 6994845 ~ 7001112 (+) True LOC113539683
XR_003403952.2 lncRNA upstream 414334 6996073 ~ 7001081 (+) False LOC113539683
TU359932 lncRNA upstream 514885 6898490 ~ 6900530 (+) True G303658
TU359917 lncRNA upstream 544643 6867718 ~ 6870772 (+) True G303645
TU360207 lncRNA downstream 128 7420706 ~ 7446186 (+) True G303891
TU360208 lncRNA downstream 16877 7437455 ~ 7448739 (+) True G303892
TU360300 lncRNA downstream 283638 7704216 ~ 7705243 (+) True G303966
TU360545 lncRNA downstream 482777 7903355 ~ 7903564 (+) True G304193
TU360554 lncRNA downstream 554048 7974626 ~ 7983380 (+) False lrrn2
XM_026935653.2 mRNA upstream 197044 7213709 ~ 7218371 (+) False fam72a
XM_026935652.2 mRNA upstream 197044 7213737 ~ 7218371 (+) True fam72a
XM_034314011.1 mRNA upstream 197044 7213737 ~ 7218371 (+) False fam72a
XM_034314010.1 mRNA upstream 197044 7213737 ~ 7218371 (+) False fam72a
XM_026935651.2 mRNA upstream 197044 7213737 ~ 7218371 (+) False fam72a
XM_034314288.1 mRNA downstream 27275 7447853 ~ 7541196 (+) False foxp4
XM_034314028.1 mRNA downstream 129208 7549786 ~ 7593458 (+) True mdfi
XM_026935267.2 mRNA downstream 129302 7549880 ~ 7593458 (+) False mdfi
XM_026935544.2 mRNA downstream 285650 7706228 ~ 7834194 (+) True ppfia4
XM_026935545.2 mRNA downstream 285650 7706228 ~ 7834194 (+) False ppfia4
XR_003403967.2 other upstream 636057 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 2946241 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 5916928 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 5917788 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 6550527 863338 ~ 864888 (+) False fbxo42
XR_004580199.1 other downstream 1081060 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 1081060 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 3092093 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 3343696 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 3348129 10768707 ~ 10773442 (+) False LOC113539694

Expression Profile