RNA id: XM_026935175.2


Basic Information

Item Value
RNA id XM_026935175.2
length 4310
RNA type mRNA
GC content 0.42
exon number 2
gene id lrrn2
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 7974591 ~ 8026929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagaggggaGTGGAGTGGAGAGCACACAGATCCGTCCTCTGTAGAACGCCTACACAGTGTCAGTAATAAAGACACAGTGCTGTAGGTTGGGGGCTAAAGACTGGGTCTGTGTGTAATCCTGAGAGGTGCGCTAAAGTGGCGTCGTGAGAAAAGACACAGAATaagctgggggaaaaaagaaaaacagcgaggggaaagaaaaaaggaagatcAGAAGACAAGACAAAGCCTTGAGACACACAGATGTTTCTTGTCTTTTCGGGGTATGCCTCTGAAGCAATCCTGAAAGCTCCATTGGACAAGGATGTAAGAACAAGGGAATGAGAAGAGACCCAAACCCATCTTAGTGTGTCCCACTTCAGAACATCAAAGCAAGTCATTCTTTGATAAATCTAGAAGAGTGGAGAAGATGAAACACAAGAAATTTAATTTTGGAGACAATTTATTTGCAAACACCAAGTGAAATTTATGCAGTGATAACAACTAACTAACCaacatttctaataaaaatgaGTGAGATTACAATGTTTTTTGTACATATTCACCTCCTGTTTGGGGTTGCTAGCTCCTTGGTTATTCACTCAATCCCCTGGAAGGTACCCTGTCCTCACCAGTGTGTATGCCAGATCAAACCCTGGTACTCACCCCAGTCCGTGTATAGAGAGGCTCCGACTGTTGACTGTAATGACTTGCTCCTCACTCAGTTGCCCACATCCCTCCCACCAGAGACACAAACACTAAGACTACAGAGCAACCTTATCAGTTCAGTGGACCAAAGTGAACTCCAGGGTCTCGCCAATCTAACTGAGCTGGATCTCTCCCACAACAGTTTCATCAGCACCCGTAACTTGAGAATCACTGACCTGCCAGCTCTTCTAAGCCTACACATGGAAGAGAATCAGCTGAGGCACCTGCCTGAAGCAGCTTTCGCTGGACTGGCTAACCTTCAGGAATTGTATCTCAATCATAATAGACTCAGAAGTATTTCCCCAGGAGCTTTCAAAGGTTTAGGTAACCTTTTAAGGCTTCATCTCAACTCTAACCACCTAATGATAATTGACAGGCGTTGGTTCCATGCTTTGCCTCAACTAGAAGTACTCATGACAGGAGGAAATCCAGTGGACACTATCCAAGATTTCAACTTCAAACCTCTTGGATCCTTGCGCAGCCTGGTCCTGGCAGGTATGGGCTTACGTGAGATCTCAGAGCGTGCTCTAGAAGGACTTCTGAACCTGGAGAGTATTAGCTTCTATGACAACAACCTGACCAAAGTCCCAAGAGAGGCTCTGCAGAAGCTACCAGGCTTGAAATTTCTGGACCTTAACAAGAACCCAATTCAGCTGGTGAAGAAAGGGGACTTCAGGGACATGCTTCACCTGAAGGAGCTCGGCTTGAACAACATGGAGGATCTGGTGTCCATTGAGCACTCAGCAATGGAAAACCTCCCTGAGCTGACAAAATTGGAAATCACAAACAATCCACGACTGTCATACATTCACCCTCAGGCTTTCCAGAAGCTACCACGTATGGAGAGCTTGATGCTCAACAGTAATGCCTTGAGTGCTCTGCATCGCCAGACTGTGCGGTCTCTGCCAAGCTTACAGGAGATCAGTCTGCACACCAATCCCATTCGCTGTGACTGCCTTATTCGCTGGGTGGGGGCAGAGGATGACAAGCCAGTTCGTTTCATTGAACCACAGTCCACATTCTGCTCAGAACCTCCAGAGTTAAAAGCAAGACGAGTGAAAGAAGTCTCCTTCAGGGAGATGGCAGATAGCTGCCTCCCTCTGATTGCCCCAAGCATGTTCCCTTCATACATTCAAGTGAAACACGGGGACAACATAGCTTTGCATTGCCGAGCACTGGCAGAACCAGAACCAAGTATTTACTGGGTCATTCCAAAAGGTTTGAGATTAACTCCTTCCACAAAGTTTGGACGTTACCATGTTTTAACAGAGGGCACTTTGGAAATATTTGGAGTCACTTCTGAGGAGGCTGGTTTCTACACTTGTGTTGCACAGAATCTAGTTGGGGCTGACACAAAGAGTTTGACACTAAAAGTAGAGGGATCTGGCAGGGCTCAAATAACAAACAATCAAAGAAATGAAGACAGCCTTGAGGTCCATGATGTTAAAGAACGGTATGCTTTACTGTCTTGGCACACTGGCCATAACATCCCTGCTGCCCGAATCTCTTGGACAGCCAACGGAAGCCTGGAAGACCACCACAAGCATAGCACTAGAATATTAGCTGGCACTAGAGGCTTCAACCTAACCCGCCTCCAACCAGGTACCCATTACAAGGTTTGTTTGCACATGGGGCCAAATGACACCTCCTGTGTCCATCTCAGGACTAAAGAGGTGCTTCTACTAGTTCCTTCTGCAGACATCACTCCAGTATTCCTACTGGGTGTATCAGCTTTTTTCCTCATCCTTTTGGCAGCCAAAACTTGCCAGGGGAGGACAATGTATGATTGGAAAGAGTTTGAGAAACCCCATTCCACCATTTTGACCCAGGAAGCAAAGGATTTCATGGCTCCAGATTCACTTCAGCAGTACAAAGACAAACTCTCAGAGGGCAGTGGAAAGGTGCTCAGTGATGTCAAGCCAGTGCAAGATGTTCCGGGTCCTGCAAAAGAGGTGTTTTAAGATACACGATGTACAACAGCTCAAAGGGAATATGCCAGAGAAGCCGTACAAACTTTGTAAAGCTACTCAGATTACAGCTCACAGTCAACACTAACAGTCCACTGAACAAAACCATAGCTTTTTTGCAAGGTTACAAGTGTTCCAATTATAAATACAGTGTCATTATAAgagatttcatttttatttattttataatggaAAAGATACAGACCGTATATGTATAGTAAAAGCATTTTACATGTAATCACAAACAATATATACTGAGAAAACTGAGCAGATGGTGCCAGTTCTAAGATAGAGCTATCAACTGTTTGTAAGAAGCTGTGAACTCTGAAAGAAGCATGAACTTTACATGAAAGTTGCAAGGTGAAGTGAAATACTCACATATTTTTCATGCTCCTGAAGCCACAGAGTTGACAGGTGGGCAAAGAAATTCTGTGAAAGTCTCTCAATTTTGTGACAATTTAGGAGgaaacagatgtttttttttttttaagaatcatGTTCTCCTGGTGTGAATTGTTAAAGAATTAAATGttacttttctattttttaaaataatactgtctttttcaaataaaaaggTCTAAGCATAGGTACTGAAAGAATATGTAAAATACAGAAGGGTATTTTTAATATGTTGCATAACTGTACATCCAGTATTTCTCTTTGATATTATGGGCCATATTCAGCACACAACATGAAGTCTGAGCTATCAAGCGGTATCTTCGtctcagtgtatgtgtgtgtgtgtttgtctttttaatgatggacacatctatatatatatatatgaccaaGGACACAACATTATGTGCTAATCAGGGCTCTGTTTGGCTATggatttctctttttctcactcaaaaccaaacaaaaattcTGAAAGTACTCTCCCAAAAGATCGATTATCAAGTGACATTCAGCCCTGAATAGCTTCATTGTGCCAGTTTCATACATTTTATGGATGGAGACAGAAGGAAAAGCCCCAGGACTCTGTGAGGGGTATTCGTACTTGCCAACGTGCTGAGTACAATGAATGAGACATGtcctgttgtttatttatttttttttttaaaaaggcaattctctcttttttttttttttggaaatgcaaTGGAAAGACTGGATACTGCTAACTGGGACATGCTTGAAGGAAGGATTTAAGAGACCACTTGagtataaaatgtctttcattCTCAACAGCTTGTTGTCTGACTTTTTAGTCAGGGACCCTGCACTgacaaaatgacatttacaCTGGAAGAAATCTTACCAGAgcaatgcagtttgtcatttgtTAACAGGATTGTCAGTACTAAGGATTGTGAGCTCTGCTCTTCTCACTTCTCTAGTATGGGAAACCCCATTTTCTACAGTGTCATTTATGGtaaagctgctgttttgtttgagttttttgtCAGTTTGTAGTTGATGTGTCCCTATGTTTCAGAATTTCTTGCTCTAACTAaactgtctctcttcctctattatttttttccatttgataTAATTTGTTGGCTCTTACTTTCTATCACCTCAAATCTGTACATACACTAAATCACTCTGAATTTCCTATCAATGTTCAGCTCCCCTTTCAGAAATTATTTAGAAGGCTGTGTGTTAAATTCTATTTTGAGGTATTATTAAACCATTTTAGACTGA

Function

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU360545 lncRNA upstream 71027 7903355 ~ 7903564 (+) True G304193
TU360300 lncRNA upstream 269348 7704216 ~ 7705243 (+) True G303966
TU360208 lncRNA upstream 525852 7437455 ~ 7448739 (+) True G303892
TU360207 lncRNA upstream 528405 7420706 ~ 7446186 (+) True G303891
TU360205 lncRNA upstream 554013 7415415 ~ 7420578 (+) True G303889
TU360645 lncRNA downstream 133752 8160681 ~ 8191673 (+) True G304286
TU360648 lncRNA downstream 134870 8161799 ~ 8165909 (+) True G304289
TU360658 lncRNA downstream 190939 8217868 ~ 8218135 (+) True G304299
TU360730 lncRNA downstream 367793 8394722 ~ 8402133 (+) True G304367
TU360731 lncRNA downstream 372142 8399071 ~ 8402133 (+) False G304367
XM_026935600.2 mRNA upstream 77848 7855844 ~ 7896743 (+) True si:ch211-86h15.1
XM_026935544.2 mRNA upstream 140397 7706228 ~ 7834194 (+) True ppfia4
XM_026935269.2 mRNA downstream 223596 8250525 ~ 8260663 (+) True csf1a
XM_026935270.2 mRNA downstream 223609 8250538 ~ 8260663 (+) False csf1a
XM_026935247.2 mRNA downstream 454166 8481095 ~ 8561702 (+) False nfasca
XM_026935249.2 mRNA downstream 454166 8481095 ~ 8561702 (+) False nfasca
XM_034314089.1 mRNA downstream 474709 8501638 ~ 8561702 (+) False nfasca
XR_003403967.2 other upstream 1195233 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 3505417 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 6476104 1496860 ~ 1498487 (+) False LOC117599925
TU355413 other upstream 6476964 1496860 ~ 1497627 (+) False LOC117599925
TU355179 other upstream 7109703 863338 ~ 864888 (+) False fbxo42
XR_004580199.1 other downstream 474709 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other downstream 474709 8501638 ~ 8558788 (+) False nfasca
TU362120 other downstream 2485742 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 2737345 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 2741778 10768707 ~ 10773442 (+) False LOC113539694

Expression Profile