RNA id: TU361012


Basic Information

Item Value
RNA id TU361012
length 323
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G304600
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8761931 ~ 8762253 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tataaatatacaatactTACATCAAATATGTGTTAAACAATGTGCTCCTTTTTCAGCTGCAGTATACAGTTCAACTGAGGCTGGTGCTTTCCTCAGGCAGACATGTGCTGCACTGTAGCAGCTGTGGCAGACGACAGTGAAAAATGACTAAGCTCCAGCCTGCAGTTACATCAAGCCTGCCCCATGAAGAATACATGTGTACCCACACTGTAacaccctctctctttccctctctcagtcCCTGTCTGCTGTCTGCCCACCCTATTCCTTCACTGTAGGGACGGCCCCCATCTGCTGCACTATAAACCCAAACTGTAAACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361008 lncRNA upstream 288 8756598 ~ 8761643 (+) True G304599
TU361011 lncRNA upstream 3381 8756598 ~ 8758550 (+) False G304599
TU360977 lncRNA upstream 43468 8718224 ~ 8718463 (+) True G304575
TU360968 lncRNA upstream 72222 8689493 ~ 8689709 (+) True G304566
XR_004580236.1 lncRNA upstream 90234 8669638 ~ 8671697 (+) True LOC117599908
TU361111 lncRNA downstream 176806 8939059 ~ 8939687 (+) True G304669
XR_003403942.2 lncRNA downstream 242438 9004691 ~ 9016994 (+) True LOC113539633
XR_004580248.1 lncRNA downstream 243650 9005903 ~ 9016994 (+) False LOC113539633
XR_004580247.1 lncRNA downstream 257347 9019600 ~ 9021252 (+) True LOC113539427
XR_003403926.2 lncRNA downstream 257347 9019600 ~ 9021252 (+) False LOC113539427
XM_026935365.2 mRNA upstream 61287 8693677 ~ 8700644 (+) True maf1a
XM_026935337.2 mRNA upstream 78459 8673185 ~ 8683472 (+) False zc3h11a
XM_026935665.2 mRNA downstream 51328 8813581 ~ 8819844 (+) True pnp4a
XM_034314007.1 mRNA downstream 106766 8869019 ~ 8879676 (+) True rem1
XM_034314005.1 mRNA downstream 107416 8869669 ~ 8879676 (+) False rem1
XM_034314006.1 mRNA downstream 107416 8869669 ~ 8879676 (+) False rem1
XM_026935224.2 mRNA downstream 107416 8869669 ~ 8879676 (+) False rem1
XR_004580199.1 other upstream 203020 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 203143 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 1982573 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 4292757 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 7263444 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 1750418 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 2002021 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 2006454 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 2006454 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 2349486 11111739 ~ 11112518 (+) True G305727

Expression Profile