RNA id: TU361416


Basic Information

Item Value
RNA id TU361416
length 2557
lncRNA type sense_over
GC content 0.39
exon number 4
gene id shisa4
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 9536125 ~ 9551761 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACAGAGGAAGTGCTTGCTTGCGCAACATACTCCGGCTGCCGGgccattaatatttaaataattatttcagcCGAAGCAAATGTAACTCTTCCCTTATACATCTTACCTGACCGGAGTGATTAACTGGAACTGAGATGCCGCTATCAGCTGTGCTGGTCCCGCTACTCTATATGGTTTTATCTGCTTGGCAGGCCAATGCCAATGAGGACTGCCTGTGGTATGTGGACAAAAATGGGACCTGGCACAATGGCTTCGACTGCCCACTCATCACCTTCTGCTGTGGAAACTGCCACCATCGTTACTGCTGTCTTGATAGGATCAAGATGATCACAGAAAGTGGACAGAAACGCTGCATGCTCTTTCATCTTAggtacagtgtgtatgtatatgtgtgtgtacaaccTCACTAATAGTATTTCCCAAGCCAGAGTTAACAtacataaatcattttataGGACAGTAACTTTTTATGACAAAAAGAGAAACCTTGGTTCACAAAGTACTTTTTTGTACTGTAATCccaaatttatttgtttctgatTTAACTTATATTTATCACATTTTGTGGTTATATTGGCACTGTACTTTGGAGTAGATTGCTTGGCAGACTCTTCCCCCagccctctgctctcctcttgACCAAGCAGCAGCAAGTGCATTTAATGTCCCACTCACACATAAAGGCTTAATTGCATACAAGTAAGTTATAGAGATGAACTGTTATGGTGATTTCATGCAGTGTGAGTGAGTTATGCAGGAATTCTTTTTATATTCTCCCTAATAAGTGAAAGTGTACTATAACTGTCTGATCAGTGTTCTGTTCCTTAGTCCCTCCACTATAGCAGGTATTGCTTCGTCCATCCTACTCTTTGTGGCCGCCATTGCCACCATGGTCTGTTGCTTTATGTGCTCATGCTGCTACCTGTATCAGCGGCACAGGCAACATGGCAGGACATCTTATGATTCCCAGCAGATTCCTATGGCCAGCTACCCTGTGGGGCCTATGTACGATGCTTATGGTAAACCTATTGGAAATTTTGAGTACTCTGGATATGCAGTGGCACCTCAGTATCCTGGTATGCCTCAGCAGTGTCCCAGCTTCCCTCAGGTGCCATACCCCCCATGTCTTCCTGCCAGTCCAGGGCCCAGTCAAGAAGCGCCTCCACCATATTCTGCTTCATAGCACCCAGAACCCAGGCCACTGAGAGATCCTCCAGGAAGTGGAGCATAAAATGAGTTTGTGGCATGGGGCCCTGCTCTTGAGGAATCCTCAGAATAATCTGCAACACTTTATAaagtcatatttattatatttatttttaaataatctctgGAGTGAAGCATGAATGGCCTGGTTTTGCCTGTTATTGGTAGTGTGAAGTGTAGAGATGTTTCATGTTACTGACTGGCGAAACAGGTTTCCCCCTAAAACACTCAACTTATTTAGGATTCACCTATCCTCAGTTAACTTAATTGTCTAGTTATAATAACGTTGGTACATTACCATTCAAAAAATGTCTAGGAGTTAGCAAAAGAATTAACAGACAAGGTTACTGGTTTTGGTTTCCAGCTTTGTGTTTTACTTAATAATTGttagtttataatttaataataatgaggtGTAAATTACATGCAGCCTTTTCCTGCACCTTCAGTTCATGACAAGGAACCTAATATGCCCATTTTGCTCTTGGAGTTCAAATTTAACTTAACAGGGTAAATGTATTACTATATTAAACATACTTACTGGTGTATAGTCTACAATACATAAAAGTAGTCCTAATAGCTTTTGGTTTTAATGGTGTTCTCTTCAGACTTTGACAGTAGTATATCTGTTCTTTCAGTTTACTTTAACTGTAATTTTGATAAATACTAAGATTAAACaggctttacttttttttaaatgtttattacactaaatgagacaaaaaaaggcaaattgGTGGTGAATTGTTTGTTATGGACTGAAAAGAAGTTGGTAGCAAGAATCAGGaatttttgtgaaaatatttctaaaacttGTTATGCTAAACCAACATGAACTCATTTGCAGTACCCCTTGAATTAAACATCTGTGGTACAGTGTGGGTAAAAACATTGTGCATTGTCATTGTGCATTGTTTAAGTTTCTTTTACTTTAAAGCCTCTGTCAACATGGTTTCAAACTAACCAGTGGTCCATTAATTAAATTGTTGCTAACTGTACAATATATTGATTATAGATGAATCTGACAAAAACTGATTAGAATAGGGTAGTGCAGGTTGTCTCAGAGTGCACTGACACTGGCATCTCCTCTGCAACATAAACAACCTCACAGCAGTCTGGCGAAAAGAAGTTAATAATAACAAATCAGGACATTTGTGCAATTCATTAGTTCTTacagaattaatgaattaaaacataATGAGGTGATTTTTGTTAAAAGGACTAGTCAATAACATCACCACAGAAGCTTCAAATTTTTGTGAACATTTGATAGTGTACATTTTGAAGGACACAAATATGTAATGACAGTAATGACAGAAGAATAACCATTTCACTCCTGGAATGATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361388 lncRNA upstream 108781 9426043 ~ 9427519 (+) True G304927
TU361387 lncRNA upstream 132033 9404051 ~ 9404267 (+) True G304926
TU361385 lncRNA upstream 140374 9395575 ~ 9395926 (+) True G304924
TU361378 lncRNA upstream 170467 9360330 ~ 9365833 (+) True G304917
XR_003403966.2 lncRNA upstream 223509 9311720 ~ 9312791 (+) True LOC113539732
TU361423 lncRNA downstream 9861 9561385 ~ 9561606 (+) True G304947
TU361425 lncRNA downstream 23898 9575422 ~ 9576781 (+) True G304949
XR_004580259.1 lncRNA downstream 43604 9595128 ~ 9603865 (+) True LOC113539661
XR_003403949.2 lncRNA downstream 43604 9595128 ~ 9603865 (+) False LOC113539661
TU361507 lncRNA downstream 47469 9598993 ~ 9603778 (+) False LOC113539661
XM_026935241.2 mRNA upstream 48271 9437233 ~ 9488029 (+) True ipo9
XM_026935242.2 mRNA upstream 48271 9437233 ~ 9488029 (+) False ipo9
XM_026935243.2 mRNA upstream 48271 9437233 ~ 9488029 (+) False ipo9
XM_026935244.2 mRNA upstream 48271 9437233 ~ 9488029 (+) False ipo9
XM_026935711.2 mRNA upstream 100419 9410252 ~ 9435881 (+) False kdm5ba
XM_026935607.2 mRNA downstream 16527 9568051 ~ 9573289 (+) True lmod1b
XM_026935383.2 mRNA downstream 544006 10095530 ~ 10099522 (+) True LOC113539559
XM_026935605.2 mRNA downstream 550790 10102314 ~ 10138886 (+) True gnl3l
XM_026935543.2 mRNA downstream 728996 10280520 ~ 10289815 (+) False mon1bb
XM_026935542.2 mRNA downstream 729012 10280536 ~ 10289815 (+) True mon1bb
XR_004580199.1 other upstream 977389 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 977512 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 2756942 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 5067126 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 8037813 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 961147 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 1212750 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 1217183 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 1217183 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 1560215 11111739 ~ 11112518 (+) True G305727

Expression Profile