RNA id: TU361510


Basic Information

Item Value
RNA id TU361510
length 1860
lncRNA type inter_gene
GC content 0.34
exon number 5
gene id LOC113539661
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 9595128 ~ 9603865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAATTTTTCAAACTGAGGAGTCCGCCATTTCTGCCCGTTCTCTCAGATAACCATGGTTGATAAATGGTCAGTAGATGACACGTGCCACTGGCTTCAAAATATAAACCTTATTGATGCAAAAGAAAGTTTCAGAGATACACAtgaaaatttataaatgttcattttgtgaTGTGAAGTTTCAACTCAAAAAGTATCTAACTCACCTGCAAGTGCAACATAACCACCAAGCAGATTTTAGTGTTACCTGTAAGACCAAGGGATGTTTTTAGAAGATTTACTTCAAATGTTCTTTAAAGCAACTCAGGATACCATTGTTTCCAGTTTGGAGTTCATCTTGAAATTTTTCCaacaaaattattttgaaatcatAAAATTCCACTTGACCAAATCTGGGTTTAGACTAGAGGACCAGGAAGGCTTGGATAACTTGCTAAATAATCAGACACTTATAGAAAGTGTGTTTGCCTATATTCAGTCAGACTATCAACTTTTCAAATATTGCAAAGAACATCTACATTTAGTGGAGCCAGTTAAGCACATTCTTGAAACCAATAGCCAGGGGAAGGAGGACATATTTCACCTATCATAGATGTTCTGAAGACTCAGTTGGAGAAACAGGACATATTTGAATCATATCAAAGAACCTGTGAACAAGCCCCAGCTGACAACTTTTCCAAAGAGTACAGATTATGGAGAGACCTGCAGCTGAAGTAATGGAGCAGTTTCCTTTTCTTGGAGTGCCACAGCTTaTGCTGCATGAAATGACAATGAGGTTTGGAACAGACTTGGTGAAGAACATGGAAACATCTCTAAATGAAATGGCCCCAAACATCATCAGGAGTGCAAAggaggaagtaaaaaaaaaaacaaataaatctcaTTGGACCAGAAGAGGTAACCACAGAAGGAACACAAAGGTCCTACACCAACCATAGTGTTCAACGGCTCTCCTGATCCTCTCAAGGCTGAAAGTGTCAGCATTATAATGGACAACATAACATGACACAGGCTGTGGAATGCATGTTTGCAGtctattttcttttcagtgtgCAATACCCGGTTGCCATTAAGCGCACAGTGacttttattcaaaaatatatGCTTAAACTTAGATGTCGCCATGACACAAGAACACCAATACCTGTACTAAAAATGTACAGTCAGCTTGTGTAAATTGTAGTGATATTTAATAGATGTTTTAATTGTTCATGTATTGTTTTTATCTGcattgtgatttgtttttcctcatttcagagatacatgtaaaagtaaagtactgtatacatacatacatacataagcttgtttatgtactgtatgtttattaaaaagtgaaaatgctcaagtgaaattaaatctaaatggttaaatgtaattaaacatttgaaatgtaaaataatttaaagttttGCTGTCTAATACAGAGTAAACAGAGGTGCAATTTTAAACATAACactaatatttttgtataataaatTGAATGAACTTAAACTTTTAGAATTTTCTGGATTGgttatattttcttattcagTGATACATAACTCTTAATAataaagaacccttaaatgGTTCTAAAAAGCATCATCTAACTTGGATTCAAAGAACGATTTGGGGTTCTTTTTAATGAACCCATTAAAatggttctatgtagaatcATTTTGGGGTTCCATGTATGAAGCGGGTGATAGGACCATTTCTGGTTCTAAATAGAACCGTTTCTTTTAAGagtgagatgcttttccatCAAACATTCTATGCCTGTGACTTTGTCCATTGACTCTGtaatttctctttgtttctaCATTCTGTATATTGTGCGTTTGTGTTTTGTACAATAAACTCATTACTGTATCTCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361425 lncRNA upstream 22212 9575422 ~ 9576781 (+) True G304949
TU361423 lncRNA upstream 37387 9561385 ~ 9561606 (+) True G304947
TU361417 lncRNA upstream 47232 9545229 ~ 9551761 (+) True shisa4
TU361416 lncRNA upstream 47469 9536300 ~ 9551524 (+) False shisa4
TU361388 lncRNA upstream 171474 9426043 ~ 9427519 (+) True G304927
TU361530 lncRNA downstream 2681 9606546 ~ 9612552 (+) True G305030
TU361579 lncRNA downstream 86125 9689990 ~ 9690194 (+) True G305068
TU361580 lncRNA downstream 87432 9691297 ~ 9691500 (+) True G305069
XR_004580262.1 lncRNA downstream 96144 9700009 ~ 9704373 (+) True LOC117599922
TU361706 lncRNA downstream 408678 10012543 ~ 10013541 (+) True G305188
XM_026935607.2 mRNA upstream 25704 9568051 ~ 9573289 (+) True lmod1b
XM_026935611.2 mRNA upstream 47368 9536125 ~ 9551625 (+) False shisa4
XM_026935242.2 mRNA upstream 110964 9437233 ~ 9488029 (+) False ipo9
XM_026935383.2 mRNA downstream 491665 10095530 ~ 10099522 (+) True LOC113539559
XM_026935605.2 mRNA downstream 498449 10102314 ~ 10138886 (+) True gnl3l
XM_026935543.2 mRNA downstream 676655 10280520 ~ 10289815 (+) False mon1bb
XM_026935542.2 mRNA downstream 676671 10280536 ~ 10289815 (+) True mon1bb
XM_034314339.1 mRNA downstream 676671 10280536 ~ 10289815 (+) False mon1bb
XR_004580199.1 other upstream 1040082 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 1040205 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 2819635 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 5129819 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 8100506 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 908806 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 1160409 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 1164842 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 1164842 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 1507874 11111739 ~ 11112518 (+) True G305727

Expression Profile