RNA id: TU361580


Basic Information

Item Value
RNA id TU361580
length 204
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G305069
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 9691297 ~ 9691500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTACCCTATGGTGGAAAGACAGAAGATAATGGCAGAGGGGGTTAAGCATAGGTTACATAGGGGTTGCTTTTATAATACCATTCTCACCCTCTTTCCAGTGCCATCACCAAGTTCTCTGCTAAGCTATTGCCCAAGTGGGAGGGACCAGCAGAAACAGTCAGTAAAATAGGGCCAATAAATTACACTGTACAATGGGGTAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361579 lncRNA upstream 1103 9689990 ~ 9690194 (+) True G305068
TU361530 lncRNA upstream 78745 9606546 ~ 9612552 (+) True G305030
TU361510 lncRNA upstream 87432 9598993 ~ 9603865 (+) False LOC113539661
TU361507 lncRNA upstream 87519 9598993 ~ 9603778 (+) False LOC113539661
XR_004580262.1 lncRNA downstream 8509 9700009 ~ 9704373 (+) True LOC117599922
TU361706 lncRNA downstream 321043 10012543 ~ 10013541 (+) True G305188
TU361734 lncRNA downstream 342895 10034395 ~ 10034599 (+) True G305214
TU361738 lncRNA downstream 357724 10049224 ~ 10049439 (+) True G305218
TU361748 lncRNA downstream 376933 10068433 ~ 10068637 (+) True G305228
XM_026935607.2 mRNA upstream 118008 9568051 ~ 9573289 (+) True lmod1b
XM_026935611.2 mRNA upstream 139672 9536125 ~ 9551625 (+) False shisa4
XM_026935242.2 mRNA upstream 203268 9437233 ~ 9488029 (+) False ipo9
XM_026935383.2 mRNA downstream 404030 10095530 ~ 10099522 (+) True LOC113539559
XM_026935605.2 mRNA downstream 410814 10102314 ~ 10138886 (+) True gnl3l
XM_026935543.2 mRNA downstream 589020 10280520 ~ 10289815 (+) False mon1bb
XM_026935542.2 mRNA downstream 589036 10280536 ~ 10289815 (+) True mon1bb
XM_034314339.1 mRNA downstream 589036 10280536 ~ 10289815 (+) False mon1bb
XR_004580199.1 other upstream 1132386 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 1132509 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 2911939 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 5222123 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 8192810 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 821171 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 1072774 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 1077207 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 1077207 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 1420239 11111739 ~ 11112518 (+) True G305727

Expression Profile