RNA id: TU361738


Basic Information

Item Value
RNA id TU361738
length 216
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G305218
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 10049224 ~ 10049439 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggacatgtatggctgccaatggaacgggctcactgaagtagcaagatgaattctgaggtgtatagggctatactctctgctcacattcagcctaatgctacaaaactgataggacgctgcttcacagtacaggtggataatgaccctaaacatactgcaaaagcaactcaagactttttgaaggcaaaggaaaggaatattcttcaatggccaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361734 lncRNA upstream 14625 10034395 ~ 10034599 (+) True G305214
TU361706 lncRNA upstream 35683 10012543 ~ 10013541 (+) True G305188
XR_004580262.1 lncRNA upstream 344851 9700009 ~ 9704373 (+) True LOC117599922
TU361580 lncRNA upstream 357724 9691297 ~ 9691500 (+) True G305069
TU361579 lncRNA upstream 359030 9689990 ~ 9690194 (+) True G305068
TU361748 lncRNA downstream 18994 10068433 ~ 10068637 (+) True G305228
TU361752 lncRNA downstream 22810 10072249 ~ 10072468 (+) True G305232
TU361730 lncRNA downstream 89849 10139288 ~ 10139730 (+) True G305210
TU361912 lncRNA downstream 181093 10230532 ~ 10232192 (+) True G305368
TU361934 lncRNA downstream 204451 10253890 ~ 10254274 (+) True G305382
XM_026935607.2 mRNA upstream 475935 9568051 ~ 9573289 (+) True lmod1b
XM_026935611.2 mRNA upstream 497599 9536125 ~ 9551625 (+) False shisa4
XM_026935242.2 mRNA upstream 561195 9437233 ~ 9488029 (+) False ipo9
XM_026935383.2 mRNA downstream 46091 10095530 ~ 10099522 (+) True LOC113539559
XM_026935605.2 mRNA downstream 52875 10102314 ~ 10138886 (+) True gnl3l
XM_026935543.2 mRNA downstream 231081 10280520 ~ 10289815 (+) False mon1bb
XM_026935542.2 mRNA downstream 231097 10280536 ~ 10289815 (+) True mon1bb
XM_034314339.1 mRNA downstream 231097 10280536 ~ 10289815 (+) False mon1bb
XR_004580199.1 other upstream 1490313 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 1490436 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 3269866 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 5580050 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 8550737 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 463232 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 714835 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 719268 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 719268 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 1062300 11111739 ~ 11112518 (+) True G305727

Expression Profile