RNA id: TU362098


Basic Information

Item Value
RNA id TU362098
length 219
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G305496
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 10479700 ~ 10479918 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCACAGTTAAAACTTAAGTGTCTTGCGGCTTCTGTGAACAGTAAAGCCTGCCTTCTTTGATTTGACTGGCCATCTCAGACATTTTAACGTTGACGAGAACTACTAGACCGCCAAGCCAGACCACCCTAACagctttttaaacttttttcatcCTAACAACATACATAGCGGTGCATAATAGAGTGCAGCAGAGCAGCATCAGAAATATCAAATACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362073 lncRNA upstream 27296 10452201 ~ 10452404 (+) True G305475
TU361944 lncRNA upstream 147753 10331743 ~ 10331947 (+) True G305392
TU361935 lncRNA upstream 224370 10254595 ~ 10255330 (+) True G305383
TU361934 lncRNA upstream 225426 10253890 ~ 10254274 (+) True G305382
TU361912 lncRNA upstream 247508 10230532 ~ 10232192 (+) True G305368
TU362108 lncRNA downstream 5536 10485454 ~ 10511398 (+) False LOC113539715
XR_004580263.1 lncRNA downstream 10633 10490551 ~ 10511435 (+) False LOC113539715
XR_004580264.1 lncRNA downstream 10650 10490568 ~ 10511435 (+) False LOC113539715
TU362106 lncRNA downstream 10845 10490763 ~ 10511398 (+) False LOC113539715
XR_003403958.2 lncRNA downstream 22378 10502296 ~ 10511435 (+) True LOC113539715
XM_026935543.2 mRNA upstream 189885 10280520 ~ 10289815 (+) False mon1bb
XM_026935542.2 mRNA upstream 189885 10280536 ~ 10289815 (+) True mon1bb
XM_034314339.1 mRNA upstream 189885 10280536 ~ 10289815 (+) False mon1bb
XM_026935605.2 mRNA upstream 340814 10102314 ~ 10138886 (+) True gnl3l
XM_026935383.2 mRNA upstream 380178 10095530 ~ 10099522 (+) True LOC113539559
XM_026935673.2 mRNA downstream 288789 10768707 ~ 10773442 (+) True LOC113539694
XM_026932796.2 mRNA downstream 581090 11061008 ~ 11064101 (+) True ppcs
XM_026932797.2 mRNA downstream 581094 11061012 ~ 11064101 (+) False ppcs
XM_026932795.2 mRNA downstream 581286 11061204 ~ 11064101 (+) False ppcs
XM_034314395.1 mRNA downstream 599142 11079060 ~ 11107165 (+) False cpne1
XR_004580199.1 other upstream 1920789 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 1920912 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 3700342 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 6010526 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 8981213 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 32753 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 284356 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 288789 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 288789 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 631821 11111739 ~ 11112518 (+) True G305727