Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU362106 |
| length | 443 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 4 |
| gene id | LOC113539715 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 10485454 ~ 10511435 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU362098 | lncRNA | upstream | 10845 | 10479700 ~ 10479918 (+) | True | G305496 |
| TU362073 | lncRNA | upstream | 38359 | 10452201 ~ 10452404 (+) | True | G305475 |
| TU361944 | lncRNA | upstream | 158816 | 10331743 ~ 10331947 (+) | True | G305392 |
| TU361935 | lncRNA | upstream | 235433 | 10254595 ~ 10255330 (+) | True | G305383 |
| TU361934 | lncRNA | upstream | 236489 | 10253890 ~ 10254274 (+) | True | G305382 |
| TU362122 | lncRNA | downstream | 5886 | 10517284 ~ 10517562 (+) | True | G305517 |
| TU362127 | lncRNA | downstream | 12702 | 10524100 ~ 10524549 (+) | True | G305522 |
| TU362178 | lncRNA | downstream | 29913 | 10541311 ~ 10541532 (+) | True | G305568 |
| TU362193 | lncRNA | downstream | 130868 | 10642266 ~ 10664214 (+) | True | G305583 |
| TU362194 | lncRNA | downstream | 155799 | 10667197 ~ 10672574 (+) | True | G305584 |
| XM_026935543.2 | mRNA | upstream | 200948 | 10280520 ~ 10289815 (+) | False | mon1bb |
| XM_026935542.2 | mRNA | upstream | 200948 | 10280536 ~ 10289815 (+) | True | mon1bb |
| XM_034314339.1 | mRNA | upstream | 200948 | 10280536 ~ 10289815 (+) | False | mon1bb |
| XM_026935605.2 | mRNA | upstream | 351877 | 10102314 ~ 10138886 (+) | True | gnl3l |
| XM_026935383.2 | mRNA | upstream | 391241 | 10095530 ~ 10099522 (+) | True | LOC113539559 |
| XM_026935673.2 | mRNA | downstream | 257309 | 10768707 ~ 10773442 (+) | True | LOC113539694 |
| XM_026932796.2 | mRNA | downstream | 549610 | 11061008 ~ 11064101 (+) | True | ppcs |
| XM_026932797.2 | mRNA | downstream | 549614 | 11061012 ~ 11064101 (+) | False | ppcs |
| XM_026932795.2 | mRNA | downstream | 549806 | 11061204 ~ 11064101 (+) | False | ppcs |
| XM_034314395.1 | mRNA | downstream | 567662 | 11079060 ~ 11107165 (+) | False | cpne1 |
| XR_004580199.1 | other | upstream | 1931852 | 8501638 ~ 8558911 (+) | False | nfasca |
| XR_004580200.1 | other | upstream | 1931975 | 8501638 ~ 8558788 (+) | False | nfasca |
| XR_003403967.2 | other | upstream | 3711405 | 6664074 ~ 6779358 (+) | False | cpne5b |
| TU358141 | other | upstream | 6021589 | 4467077 ~ 4469174 (+) | False | LOC113539599 |
| TU355411 | other | upstream | 8992276 | 1496860 ~ 1498487 (+) | False | LOC117599925 |
| TU362120 | other | downstream | 1273 | 10512671 ~ 10513270 (+) | True | G305515 |
| XR_004580251.1 | other | downstream | 252876 | 10764274 ~ 10773442 (+) | False | LOC113539694 |
| XR_003403954.2 | other | downstream | 257309 | 10768707 ~ 10773442 (+) | False | LOC113539694 |
| XR_004580252.1 | other | downstream | 257309 | 10768707 ~ 10773442 (+) | False | LOC113539694 |
| TU362376 | other | downstream | 600341 | 11111739 ~ 11112518 (+) | True | G305727 |
