RNA id: XR_004580263.1


Basic Information

Item Value
RNA id XR_004580263.1
length 847
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id LOC113539715
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 10485454 ~ 10511435 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTAGAAGATGTAAAACCAAGGACAGTAGTAATATGTACTGACTCTCATGCAGCATTATCAAGCCTTGCAAGTGGATTACATTCAAGGCAAGACATTATATATATGAGATTCTTGAAAGTTTGTTAAGAATAAATAATGCAAGCCTAATAACGTTTTTGTGGGTACCAGCTCATGTGGGAGTGGAGGGTAATGAAACTGTTGACAAATTAGCTAAGCAATGCCCCGGAATCTGGTTTGCCAACCGCGATAAAACCtcacatgaagaagaagaagaaataattcAACCCGCATAGCCGTTTCTTTCTATTGCATCTCGTAATGGCTGCTGCTCAGGCTGCGTTTTCGTCATCCTCGTCCACTTAAGCTTCAGTGAGCCTCCTTTTGGTCATCTAAACCACGCTCGGCGAGGAGGCTCACACGGACTGTTGATCACGGTGTATTAACCAACTTGGCCTTCTCCTTTGGATTACTTAATATACGATCACTTTCCACTAAAGGACCACTGGTGTACGATCTGCTGTCTGACTCTACAAACTTGGATGGTGCAGGTTCAGATGAAGACAGCCAGAGTGTTGGTGAAAGGGATCAAGATTCACCATCTTCAGAACCAGAGTCACCAAGCAATTCTTCTGGCCCAGTAGGACCTGATGATATTTCGCAGTGCAGAGCAGAGGGTTCTCTCCAACCGTCAGAGAGATTATTCTGCTCCCATAGGACCTGATGACTGAAGTTCCTCACAGATGACTCAGAGAAaaatttttaagtgttttttattgTACATACGATAACATGCCCCTGGACGGTCTGGCGGATGTATCTGACGTGTTAATAAATGGTTTATTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362098 lncRNA upstream 10633 10479700 ~ 10479918 (+) True G305496
TU362073 lncRNA upstream 38147 10452201 ~ 10452404 (+) True G305475
TU361944 lncRNA upstream 158604 10331743 ~ 10331947 (+) True G305392
TU361935 lncRNA upstream 235221 10254595 ~ 10255330 (+) True G305383
TU361934 lncRNA upstream 236277 10253890 ~ 10254274 (+) True G305382
TU362122 lncRNA downstream 5849 10517284 ~ 10517562 (+) True G305517
TU362127 lncRNA downstream 12665 10524100 ~ 10524549 (+) True G305522
TU362178 lncRNA downstream 29876 10541311 ~ 10541532 (+) True G305568
TU362193 lncRNA downstream 130831 10642266 ~ 10664214 (+) True G305583
TU362194 lncRNA downstream 155762 10667197 ~ 10672574 (+) True G305584
XM_026935543.2 mRNA upstream 200736 10280520 ~ 10289815 (+) False mon1bb
XM_026935542.2 mRNA upstream 200736 10280536 ~ 10289815 (+) True mon1bb
XM_034314339.1 mRNA upstream 200736 10280536 ~ 10289815 (+) False mon1bb
XM_026935605.2 mRNA upstream 351665 10102314 ~ 10138886 (+) True gnl3l
XM_026935383.2 mRNA upstream 391029 10095530 ~ 10099522 (+) True LOC113539559
XM_026935673.2 mRNA downstream 257272 10768707 ~ 10773442 (+) True LOC113539694
XM_026932796.2 mRNA downstream 549573 11061008 ~ 11064101 (+) True ppcs
XM_026932797.2 mRNA downstream 549577 11061012 ~ 11064101 (+) False ppcs
XM_026932795.2 mRNA downstream 549769 11061204 ~ 11064101 (+) False ppcs
XM_034314395.1 mRNA downstream 567625 11079060 ~ 11107165 (+) False cpne1
XR_004580199.1 other upstream 1931640 8501638 ~ 8558911 (+) False nfasca
XR_004580200.1 other upstream 1931763 8501638 ~ 8558788 (+) False nfasca
XR_003403967.2 other upstream 3711193 6664074 ~ 6779358 (+) False cpne5b
TU358141 other upstream 6021377 4467077 ~ 4469174 (+) False LOC113539599
TU355411 other upstream 8992064 1496860 ~ 1498487 (+) False LOC117599925
TU362120 other downstream 1236 10512671 ~ 10513270 (+) True G305515
XR_004580251.1 other downstream 252839 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other downstream 257272 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other downstream 257272 10768707 ~ 10773442 (+) False LOC113539694
TU362376 other downstream 600304 11111739 ~ 11112518 (+) True G305727

Expression Profile