RNA id: TU362373


Basic Information

Item Value
RNA id TU362373
length 562
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC113538022
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11073762 ~ 11075590 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCATATGGTGGCAGTTCATAGCCAGTCTCAGCCAGAGCTCGTATAGCTGAATGTCAATGATGTTCATCAAATATGTAAGAATATTTTAGCAAGCTGAACAAAGCCTTCAGACTGTGTGTTTTgtcatatatacacaaatatgaagttggtgatgtatgtatgatgtgattttttccaCTGGAGAAATGATGAAtggtgaaatgaaacaaaggaATCATCATCACAGCCTTCCCAGGTATGCAACCGGACACAGCCTCGACAAGTTAGTGTTCTCCTGCAGACTGGCTGTAGATACACATGGCATGCTGTTTGGATTTCGGACGAGTGAATGCCAGTCTGTCAGTGAACCTTTGCACACCACGCTTACCCATAAATCCTCTCTCTGTGTTAAGACACAAATACGCTCCAGCCTAGACGTATAAGCCAGTCTTTATGtgtggaaaaacaacaaaactgagCATAATCAGTGAAGGTGGGACTGGCTGTGTTATGTGTTGAAGGGAATGTTGAGGAAATGATGCACACATACCCAGGACAGTATGTGACAGCTGTACACCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362259 lncRNA upstream 273664 10797969 ~ 10800231 (+) False G305642
TU362260 lncRNA upstream 274767 10797969 ~ 10799128 (+) True G305642
TU362194 lncRNA upstream 401321 10667197 ~ 10672574 (+) True G305584
TU362193 lncRNA upstream 409681 10642266 ~ 10664214 (+) True G305583
TU362178 lncRNA upstream 532363 10541311 ~ 10541532 (+) True G305568
TU362383 lncRNA downstream 53745 11129288 ~ 11129487 (+) True G305734
TU362384 lncRNA downstream 58972 11134515 ~ 11134724 (+) True G305735
TU362514 lncRNA downstream 198042 11273585 ~ 11275616 (+) True G305849
TU362498 lncRNA downstream 222779 11298322 ~ 11300713 (+) True G305833
TU362499 lncRNA downstream 227747 11303290 ~ 11304633 (+) True G305834
XM_026932796.2 mRNA upstream 9794 11061008 ~ 11064101 (+) True ppcs
XM_026932797.2 mRNA upstream 9794 11061012 ~ 11064101 (+) False ppcs
XM_026932795.2 mRNA upstream 9794 11061204 ~ 11064101 (+) False ppcs
XM_026935673.2 mRNA upstream 300453 10768707 ~ 10773442 (+) True LOC113539694
XM_034314339.1 mRNA upstream 784080 10280536 ~ 10289815 (+) False mon1bb
XM_034314395.1 mRNA downstream 3517 11079060 ~ 11107165 (+) False cpne1
XM_034314396.1 mRNA downstream 3527 11079070 ~ 11107165 (+) False cpne1
XM_034314393.1 mRNA downstream 3527 11079070 ~ 11107165 (+) True cpne1
XM_026932791.2 mRNA downstream 3538 11079081 ~ 11086693 (+) True rbm12
XM_034314394.1 mRNA downstream 16715 11092258 ~ 11107165 (+) False cpne1
XR_004580251.1 other upstream 300453 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other upstream 300453 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other upstream 300453 10768707 ~ 10773442 (+) False LOC113539694
TU362120 other upstream 560625 10512671 ~ 10513270 (+) True G305515
XR_004580200.1 other upstream 2515107 8501638 ~ 8558788 (+) False nfasca
TU362376 other downstream 36196 11111739 ~ 11112518 (+) True G305727
TU362445 other downstream 92916 11168459 ~ 11178473 (+) False unm_sa1614
TU362496 other downstream 139472 11215015 ~ 11221515 (+) False dynlrb1
TU362531 other downstream 238641 11314184 ~ 11315436 (+) True G305863
TU362537 other downstream 250061 11325604 ~ 11326360 (+) True G305869

Expression Profile