RNA id: TU362376


Basic Information

Item Value
RNA id TU362376
length 780
RNA type TUCP
GC content 0.42
exon number 1
gene id G305727
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11111739 ~ 11112518 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaggggaaaattgttggcctgcatcaagcaaagaaaacaactaaggagattgctgaaatcactggaactgggttatgaaatgtccagtgcattattaaagcctggaaggatattggtgaaccgtcaactttacagcagaaatgtagttggaaaaaaatcttgaatgattgTAATCAGAtatctttaaaacgcttggtgatgtcacatcgtaaaaaaatcgacaggagaactctATGTTTAAtaggctatgtttaatagtgaaagtaagagcatttccacacgcacaatgtgatgagaacttacaggatttggactaaacagctgtgtggccacaagaaagccatttgttagtgaggctaatcggaaaaaatgacttcaatttgctagggagcataaagactggactgtggagcaatggaaaaaggtcatgtggtctgataaaatcagatttaccctattccagagcaatgggcgtgtcagggtaagaagggaaatgcatgaagtgattcacccgtcatgcatagtgcctactgtacaagcctctggaggcagtgttatgatctggggttgcatcagctggtcaggtcaaggctcagcctcattgtgcggctataaaatgaagtcagctgagcacctgaatgtactgaatgaccaggttatcccatcaatggactttttcttccctgatgggACAGgtatattccaggatgaaaatgctaagattcatcaggcttaacttcgttcagggagcatgaggaatcattttcacacatgaattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403810.2 lncRNA upstream 36149 11073762 ~ 11075590 (+) True LOC113538022
TU362371 lncRNA upstream 36196 11073895 ~ 11075543 (+) False LOC113538022
TU362373 lncRNA upstream 36196 11073895 ~ 11075543 (+) False LOC113538022
TU362259 lncRNA upstream 311508 10797969 ~ 10800231 (+) False G305642
TU362260 lncRNA upstream 312611 10797969 ~ 10799128 (+) True G305642
TU362383 lncRNA downstream 16770 11129288 ~ 11129487 (+) True G305734
TU362384 lncRNA downstream 21997 11134515 ~ 11134724 (+) True G305735
TU362514 lncRNA downstream 161067 11273585 ~ 11275616 (+) True G305849
TU362498 lncRNA downstream 185804 11298322 ~ 11300713 (+) True G305833
TU362499 lncRNA downstream 190772 11303290 ~ 11304633 (+) True G305834
XM_034314395.1 mRNA upstream 4574 11079060 ~ 11107165 (+) False cpne1
XM_034314396.1 mRNA upstream 4574 11079070 ~ 11107165 (+) False cpne1
XM_034314393.1 mRNA upstream 4574 11079070 ~ 11107165 (+) True cpne1
XM_034314394.1 mRNA upstream 4574 11092258 ~ 11107165 (+) False cpne1
XM_026932791.2 mRNA upstream 25046 11079081 ~ 11086693 (+) True rbm12
XM_026932893.2 mRNA downstream 28718 11141236 ~ 11178126 (+) True unm_sa1614
XM_026932895.2 mRNA downstream 28718 11141236 ~ 11178126 (+) False unm_sa1614
XM_034314494.1 mRNA downstream 102234 11214752 ~ 11221540 (+) True dynlrb1
XM_026932973.2 mRNA downstream 102476 11214994 ~ 11221540 (+) False dynlrb1
XM_026932751.2 mRNA downstream 111630 11224148 ~ 11235261 (+) True map1lc3a
XR_004580251.1 other upstream 338297 10764274 ~ 10773442 (+) False LOC113539694
XR_003403954.2 other upstream 338297 10768707 ~ 10773442 (+) False LOC113539694
XR_004580252.1 other upstream 338297 10768707 ~ 10773442 (+) False LOC113539694
TU362120 other upstream 598469 10512671 ~ 10513270 (+) True G305515
XR_004580199.1 other upstream 2552828 8501638 ~ 8558911 (+) False nfasca
TU362445 other downstream 55941 11168459 ~ 11178473 (+) False unm_sa1614
TU362496 other downstream 102497 11215015 ~ 11221515 (+) False dynlrb1
TU362531 other downstream 201666 11314184 ~ 11315436 (+) True G305863
TU362537 other downstream 213086 11325604 ~ 11326360 (+) True G305869
TU362623 other downstream 368151 11480669 ~ 11481100 (+) True G305955

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU142336 True 969 lncRNA 0.36 2 NC_056711.1 24042528 ~ 24067735 (-)
mexican tetra (Astyanax mexicanus) TU142336 True 825 lncRNA 0.36 2 NC_035908.1 21000139 ~ 21004638 (+)