RNA id: TU362532


Basic Information

Item Value
RNA id TU362532
length 314
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G305864
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11317187 ~ 11317500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCCTGGAGATCAGTGGAGAGCTCATAGCTCTCGGAGAGCGAGCGTGAGCGTTTGATGGCCTCCTCCTCAGCCTGTTTGCGGAGGATAGATTGTGAGTGTTGGAGTTTGGGGCGACGTGGCCGCTGCCGGACCTCGTGTGTGTAAAGCGACGGTGCCTCAAAGTGCTCAGTGCTGATGATGGAGCTGCGCGTCACCGGCCCGCGAGAGTATCCGCTTTCCAGAGACGCACCTGCCTCACAGCCAGCACCATCACCTTCCACACTGCAGGGAGAAAGAGTGGGTTTCACTTAAGgcacttttattaatttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362533 lncRNA upstream 4770 11310870 ~ 11312417 (+) True G305865
TU362499 lncRNA upstream 12554 11303290 ~ 11304633 (+) True G305834
TU362498 lncRNA upstream 16474 11298322 ~ 11300713 (+) True G305833
TU362514 lncRNA upstream 41571 11273585 ~ 11275616 (+) True G305849
TU362384 lncRNA upstream 182463 11134515 ~ 11134724 (+) True G305735
XR_004580205.1 lncRNA downstream 35376 11352876 ~ 11355077 (+) True LOC117599893
TU362571 lncRNA downstream 92031 11409531 ~ 11410296 (+) True G305903
TU362588 lncRNA downstream 112319 11429819 ~ 11430045 (+) True G305920
TU362777 lncRNA downstream 225433 11542933 ~ 11543138 (+) True G306106
TU362821 lncRNA downstream 330800 11648300 ~ 11661421 (+) True G306145
XM_034314291.1 mRNA upstream 43708 11256014 ~ 11273479 (+) False cfap92
XM_026932743.2 mRNA downstream 226239 11543739 ~ 11583449 (+) True hdac11
XM_034314370.1 mRNA downstream 226239 11543739 ~ 11583449 (+) False hdac11
XM_034314328.1 mRNA downstream 291422 11608922 ~ 11671459 (+) False fbln2
XM_034314327.1 mRNA downstream 291423 11608923 ~ 11671459 (+) True fbln2
XM_034314329.1 mRNA downstream 291424 11608924 ~ 11671459 (+) False fbln2
TU362531 other upstream 1751 11314184 ~ 11315436 (+) True G305863
TU362496 other upstream 95672 11215015 ~ 11221515 (+) False dynlrb1
TU362445 other upstream 138714 11168459 ~ 11178473 (+) False unm_sa1614
TU362376 other upstream 204669 11111739 ~ 11112518 (+) True G305727
XR_003403954.2 other upstream 543745 10768707 ~ 10773442 (+) False LOC113539694
TU362537 other downstream 8104 11325604 ~ 11326360 (+) True G305869
TU362623 other downstream 163169 11480669 ~ 11481100 (+) True G305955
TU362774 other downstream 197559 11515059 ~ 11515813 (+) True G306103
TU363207 other downstream 1140101 12457601 ~ 12462536 (+) True G306480
XR_004580240.1 other downstream 3053288 14370788 ~ 14476385 (+) False asic1b

Expression Profile