RNA id: TU362571


Basic Information

Item Value
RNA id TU362571
length 766
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G305903
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11409531 ~ 11410296 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCAATTCCAATTCCTCAAGAAACATATCAGCACCCGTCATTGTATAATCTACTCTGACCCTGTCCTTGCACACAGTGCCTATGGGCGGGTGGGGGGCTTAGAGAAACATTTTGATCCCAGGAACTGCACGTCAATTCCAGTCTCATGTGAGCAACCCAATTACCATGTGTGGTGTAAAATGAGCATTACTGGCTACCACATGTTCATTATTTCCCAGTTTCTGCAGCATTAGCATTCATTTTATTACCAGCCCTGTAGGAATACCATAAAGTTCATCCCTGTTTCAGCTTTTAcagcagatttttaaaaaaatattttgtcctCATTCCAGCTGATATCTTTGGAAATCCACTGTCCGCATGCTAGTGCAGCTGTCTATAGCAGAGTGTCATTAGTTCCCCCTTGTGGAAAATCTTCAGCCTGCTAAAAGTGAGTGAGTTACGGGACAGTTCCATGATAAAATGGGAAATGGACAGCCCCATCAGCAGGGCAACACAGTGGAAAGCATGCAGGGCCCAGAGTACAGCACAGATCAGTTATTGcctatacacacagacacagctgtCTCATGAAAACAAGAAATGTTGAGGGATAAGTGCAGTGCCTACTAAAATAAGCTGGAACGTAGAACAGTTTACACATGCAGCATCTGTATGTCAACAGTGAACAGAAGCAAATAGTAAACCTTTCCATTTACCCAAAAGATGCTGACTTCCATTTGCGACAGGGGTAACTTCTTCGACAGAGAGGAGTAATATAGGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580205.1 lncRNA upstream 54454 11352876 ~ 11355077 (+) True LOC117599893
TU362532 lncRNA upstream 92031 11317187 ~ 11317500 (+) True G305864
TU362533 lncRNA upstream 97114 11310870 ~ 11312417 (+) True G305865
TU362499 lncRNA upstream 104898 11303290 ~ 11304633 (+) True G305834
TU362498 lncRNA upstream 108818 11298322 ~ 11300713 (+) True G305833
TU362588 lncRNA downstream 19523 11429819 ~ 11430045 (+) True G305920
TU362777 lncRNA downstream 132637 11542933 ~ 11543138 (+) True G306106
TU362821 lncRNA downstream 238004 11648300 ~ 11661421 (+) True G306145
TU362882 lncRNA downstream 341929 11752225 ~ 11754031 (+) True G306199
XR_004580179.1 lncRNA downstream 427042 11837338 ~ 11843605 (+) True LOC113537887
XM_034314291.1 mRNA upstream 136052 11256014 ~ 11273479 (+) False cfap92
XM_026932743.2 mRNA downstream 133443 11543739 ~ 11583449 (+) True hdac11
XM_034314370.1 mRNA downstream 133443 11543739 ~ 11583449 (+) False hdac11
XM_034314328.1 mRNA downstream 198626 11608922 ~ 11671459 (+) False fbln2
XM_034314327.1 mRNA downstream 198627 11608923 ~ 11671459 (+) True fbln2
XM_034314329.1 mRNA downstream 198628 11608924 ~ 11671459 (+) False fbln2
TU362537 other upstream 83171 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 94095 11314184 ~ 11315436 (+) True G305863
TU362496 other upstream 188016 11215015 ~ 11221515 (+) False dynlrb1
TU362445 other upstream 231058 11168459 ~ 11178473 (+) False unm_sa1614
TU362376 other upstream 297013 11111739 ~ 11112518 (+) True G305727
TU362623 other downstream 70373 11480669 ~ 11481100 (+) True G305955
TU362774 other downstream 104763 11515059 ~ 11515813 (+) True G306103
TU363207 other downstream 1047305 12457601 ~ 12462536 (+) True G306480
XR_004580240.1 other downstream 2960492 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 3104314 14514610 ~ 14521147 (+) False gpd1b

Expression Profile