RNA id: TCONS_00008020


Basic Information

Item Value
RNA id TCONS_00008020
length 3494
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_004191
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29574743 ~ 29658396 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTCTTCAACAGGGGCCTCATGCCAAGGGGCAGAAGGCAACTCAATACGGGAGACTGAAAGGGTTGCCAGATGTAAAGCTCTACTGCTCTCTGATAAAAATGAGAAACCTGATCCTTCAAGTAATATTCTGCTATGTGGGGTTAATGGGATGTCttctattaatttattgtttagcTATAGTCTACCAAAtatattgattaaattaatatttaagagCAAAATATTTTGTGTATTTGATGTTATATTATTTATAGGCCTATTATTGTTACTACCACTACTGGAACAATAAACAGCCCTTTAAATATGGCTTATTTAAAAGACGAGGAGAAAAATAATTTTGTAGATAAGTTAAGttctaatatattatataagtaTATTATCTAAATATACTAAACAATGATTATCAACTGTCATCATGATAGTCGGATAGTCTTTAAGAACCCCTGCATAAAGGATCAAATCGATTAGTCTGGGATCGATTATAACGGGAAGTTTTCAAAGCGCATGCGCTTTTTCTCCTCTTCCTTTCTGCCAAAACTGTCGGCCATGGCCCCGATCAAGAAGCAGGTGACTAAGGGTGGCAAGAAGAAAAAGCAGGTCTTAAAGTTCACCCTGGACTGCACACACCCTGTGGAGGATGGCATCATGGATGCTGCCAACTTTGAACAGTTCCTTCAGGAGCGCATCAAAGTAAATGGCAAAGCTGGGAACTTGGGTGGTGGCGTGGTCTCTATAGAAAGGAGCAAGAGCAAAATCACAGTGACATCAGAGGTCCCCTTCTCCAAGAGGTATCTGAAGTATCTTACCAAAAAGTACCTCAAGAAGAACAACCTGCGTGACTGGCTGCGTGTAGTAGCTAACACCAAGGAAAGCTACGAACTGCGCTACTTCCAGATCAACcaggacgaggaggaggaggatgaagattAAATCCATGCCACTcttttgtaaatAGTCTGTTCATTTACTGCATTAATGTATACAGGACTCCAAGTCAGGCTGGACCAATAATTTCCATAGCAACAATAAAGTTTGTGCTATAACAGAGTTCAGAGAGTTCGTTTGTCAGATAAAACTTGCATGATGTTCAGAAAACAGGCTAACATGCTTGATCGATCTCCCAGCTTCACAAGCTCAACTGTTGAAACGTAGTGTCTAAAGCACACTGTCTGGAGGAGGAGAATTAGGTTGCTTTGCTAAAGATTGTTATTCATATGGGTTTTCATAAGGTTTTTGCTGTCTGCTCTCCAGATTATTTTAATGTCTTTGTCTCGTTTGATCACGTACAGCGTCTCGCTACCGTATCCTTGGCAACGGCTCGTGATTCACGGGTTGTCCTGAAGGAGGTTCACGAGAATGAATTAGGCTAGATGCTTTTATgcaagtctttaaaaaaaaaaaaatacatatatatatatatatatatatatatatatatatatatatattacacacacatatattaaacATGCCGTACAGTAActaaaatattcataattaaaaataaatagcataaTGACCTCtagttactttaaatatttttcaatgaaaataatgGTGAGTCCTTAACATTACTTAATTCAGGGTGTCCGGAGGGTCTTAATGTCttaattttcaaaaacaatttttttgttgCCCTaatgtcttaaattcactgaaatatagtGTAGGTCTTaagtcattttaaacaggtcttaatatTCCTCTTttcaagtaaagctacccaatcaggccaacatccatccaatcaccaacataCCATCTTAATAAAAGCAGGAAAaggaaataattattaaataattaaaaacatatatatattataattataaaataattacacagttcctcatgatgataaaataacaacatacatttacattatcttatattcatatatttacatGATTAAGGGGGAGcagacataatatttataaacggccataaaacaaacagaaacgcaTTAGGTTGAAAGTTATACtcaatcaatttggaccaaaagctgccaaatatatgattttattattgtctccacaataaataattttaacaattatAAACTTGTCACAaaagaaatatgttaaaaaaaatgttacaactagagttttcttgttttgacacaaagtATGTCGCTAAGAATATATTCCTTATTTGTGGCAAAACAGGCCATTTTTAGCCCTGtatgtttagccctgtataagtctaaaatttctttTATAATGGCCTTAAAAtgggtctttaaaagtcttatttgacttgatgaaacctgcagtgCAGAAACCCTGTCAATTAGTCTTCGGGGACAGacgtcgttcattcattcattttcttgtcggctagtccctttattattccggggtcgccacagcggaatgatccgccagtTAAAGTTAAGTAAATGAACTGCCCCTCTATTGttgagtgaactgtctctttaagtccTCTTAAAACAGCTATAAACTATAAAAGTCGTGAGGGATGAGCGTTCAGGCGTGACCTTGAATATAAGATGTCCGACCTAAAtttctcaaattaaaaaaggAGCAGAACGAAATAATTTGCTTTAGTTTTCCTCGTCTGGCTGAAAAGGCAGCGTGAGGGAACTTTCTCCCGGTTTAACCTCAGATTCCTCGAACTTGAGCGGGAAAAGGGCAACGCCAGACGGGAGTGCACGCCGCTCTCGCTAGTTAAGCCGGTGACCAGACGAACAGCACTAACTAGTTGTGTCGGGGAAACTATGGGATGGATTGCCATGGCAACCGACCAGACGTCACAATCTGGGCATGTGTGTTCCATTTTTGTCTCTTTCTTATTTTCAGACTGGAGGATTTGGATAGAGAAGAGGGAGAAAGGGAAAATGTTTTTTGTCAAAAAAACGGGGCAGCCATCTTTTATTTGATTGAGAGCAGATTAAAAGAAAATTAAGCCTCACCTTCATTTGGACGTCTCCCGAGCAGATCTGGGCATTCAGAGGGTTAAGTTTCAGGACTTTTATTCCTCTGTCTCGGATGTGATTTTCTTGTTATGCGGTAAAGATGCCCGGATCGCTCAGCAATGAAGATGAGGGGCAAGACGATATGGATTTTGAGGACGACGTGCCAGGTGAGGGGGTAAAGAGTCACAGGGGAGGGAGAGTTCTGCCCTTCACAACTGCGCTGCTACGCCTAGTTGAATGCGGAGGAAAAGGGGCTTGACGCGCGTGCGATTTATTACAGTCTCTCAGTAGCTTCTCTTCTCGCACCGGACactgttcatccaaaaataacgGCGCACTGTCCGGCTGCATTCGAGTCACTAAAGCGCGACTGTCCGCCAGCACACACCATCTGTCTGCGATTCTCTTTCTGAAAAATTCGTTTCTCCTCGATCTCTCGTCCATCAGCCGGCTGTTTGCTTTTACAGGCGcatttttctttgcatttaaatGAGATATGCTTGCACCCACTGTCTTTTCCTTTCCAGTCAGCCTGCTTTGATATTGCACCCACTGTGCAC

Function

GO:

id name namespace
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0060322 head development biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-051113-276 Enables RNA binding activity. Acts upstream of or within T cell differentiation in thymus. Predicted to be located in ribosome. Is expressed in intermediate cell mass of mesoderm. Orthologous to human RPL22 (ribosomal protein L22).

Ensembl:

ensembl_id ENSDART00000183947

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008811 lncRNA downstream 105022 29537982 ~ 29544989 (-) True XLOC_004190
TCONS_00008809 lncRNA downstream 330092 29196302 ~ 29319919 (-) False XLOC_004188
TCONS_00008025 lncRNA upstream 76182 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008027 lncRNA upstream 101712 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008036 lncRNA upstream 259919 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008040 lncRNA upstream 302718 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008053 lncRNA upstream 703232 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008018 mRNA downstream 26631 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008017 mRNA downstream 26631 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008016 mRNA downstream 26631 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008014 mRNA downstream 86574 29331142 ~ 29563437 (-) False XLOC_004189
TCONS_00008015 mRNA downstream 109547 29335300 ~ 29540464 (-) True XLOC_004189
TCONS_00008024 mRNA upstream 24513 29682909 ~ 29685853 (-) True XLOC_004192
TCONS_00008026 mRNA upstream 98464 29756860 ~ 29768054 (-) False XLOC_004194
TCONS_00008028 mRNA upstream 136759 29795155 ~ 29816429 (-) False XLOC_004195
TCONS_00008029 mRNA upstream 138474 29796870 ~ 29818866 (-) False XLOC_004195
TCONS_00008031 mRNA upstream 159993 29818389 ~ 29833698 (-) True XLOC_004195
TCONS_00008006 other downstream 1054583 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00007992 other downstream 1563087 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 1930742 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 2146691 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 2146879 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00008030 other upstream 151301 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 237976 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 286534 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008043 other upstream 442746 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008048 other upstream 495422 30153818 ~ 30155835 (-) True XLOC_004201

Expression Profile

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