RNA id: TU362821


Basic Information

Item Value
RNA id TU362821
length 283
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G306145
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11648300 ~ 11661421 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAAAGTGTGAATATAATGAGCAGCTACAGCtgagtttctctctctgtttctttctctctctcactcacacacacacacacacacacacacacacacagagctctctgTTTTTCAGCTATCTGCTCACCCAAGAAAGATATTACATTATTAGATTCCAGATTCCATCACCCCAAAGCAACACATGTTCAGGAAAAAGCACTACCTGTGGTCTAAGCAGGAAAATAGACCATCCTTGTAGTCAGTTGGccttaaaggtttttttttttttttttttttttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362777 lncRNA upstream 105162 11542933 ~ 11543138 (+) True G306106
TU362588 lncRNA upstream 218255 11429819 ~ 11430045 (+) True G305920
TU362571 lncRNA upstream 238004 11409531 ~ 11410296 (+) True G305903
XR_004580205.1 lncRNA upstream 293223 11352876 ~ 11355077 (+) True LOC117599893
TU362532 lncRNA upstream 330800 11317187 ~ 11317500 (+) True G305864
TU362882 lncRNA downstream 90804 11752225 ~ 11754031 (+) True G306199
XR_004580179.1 lncRNA downstream 175917 11837338 ~ 11843605 (+) True LOC113537887
TU362969 lncRNA downstream 261048 11922469 ~ 11922676 (+) True G306284
TU362971 lncRNA downstream 263440 11924861 ~ 11925433 (+) True G306286
TU362975 lncRNA downstream 268291 11929712 ~ 11930201 (+) True G306290
XM_026932743.2 mRNA upstream 64851 11543739 ~ 11583449 (+) True hdac11
XM_034314370.1 mRNA upstream 64851 11543739 ~ 11583449 (+) False hdac11
XM_034314291.1 mRNA upstream 374821 11256014 ~ 11273479 (+) False cfap92
XM_026932863.2 mRNA downstream 132590 11794011 ~ 11797434 (+) True barx1
XM_026932864.2 mRNA downstream 132596 11794017 ~ 11797434 (+) False barx1
XM_026932911.2 mRNA downstream 406203 12067624 ~ 12096756 (+) True alpl
XM_026932486.2 mRNA downstream 515669 12177090 ~ 12185144 (+) True nmur3
XM_026932640.2 mRNA downstream 604284 12265705 ~ 12413095 (+) True ephb2b
TU362774 other upstream 132487 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 167200 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 321940 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 332864 11314184 ~ 11315436 (+) True G305863
TU362496 other upstream 426785 11215015 ~ 11221515 (+) False dynlrb1
TU363207 other downstream 796180 12457601 ~ 12462536 (+) True G306480
XR_004580240.1 other downstream 2709367 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 2853189 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 4827940 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 4827940 16489361 ~ 16494139 (+) False amigo3

Expression Profile