RNA id: TU362882


Basic Information

Item Value
RNA id TU362882
length 1807
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G306199
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11752225 ~ 11754031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAACAAAAAGTGCCTTAAAATCCTCAATATGCTCAGATGCTTTTTACAATTTCCCACTAGTTCAAGTTAATGTTCACTTAAAATTTCATATACATTCAATAAGAGAATGAGGTTAAAGTTTAAACTTTAGTTAGCTACAGTGCTTTTTGTCAACAGACAGTGTCGACCATTTACAAAACAGCAGCTTAGTAGAAAATAATGCCGTTAAAATGAGGCAGTGGACATTACGCAAAAGCTTGTACACACTTGTTAGATGTCAGTTGTGCTGAAATACCTACATTGTATGGCagaaagtatgtggacacccctcCTAATTATTGActtcaggtgtttcagccatACCCATTGCTAACAGGttcataaaatcaagcacatagccatgcaatctccacaaacactggcagtagaatgggtTGCACTGAAGAGCTCGCTGAATTTACACATAGCCCCGTCATAAGATGCCACCTTGGCCACAAATCAGTTCCTGAAATTTTTGCCCTGGTAGATCTTCCCTGTCAACTGTAAGtgttattattgtgaaatgtaaGTGTCAAGGAGCAACaacaactcagccacgaagctGTAGACTATGCAAACTCATATAGCAGGGTTGCCAAGTGCTGTATCCTCTGTTGCATTACTCACTACAGAGTTCCAATttgcctctggaagcaacatcagcacaataAAATGGGATTCCATGGCCATGAAGCTGCACACAAACCTAAGCTCACTATGTGCAATGCCAAGCCTTGGCTGGAGTGGTGTAAAACACACTGCCACTGGAATCTGGAGCACTGGAAacatgttctctggagtgatgaatcacgctttgcTATCTGGCAGTCTGATCGAAGCATCTGGGTTTGGCAGATGCCAAGAGAACAATACCTACCAGAATGCATAGTGCCAACAGTAAAttttggtggaggagggataaAAGTCTgaggctgtttttcagggtttgggctAGGCCACTTAgttacaaagacattttaggcAATTGTATGATTCCAGCTTTGTGGTAACAGTCTGGGGAAGGCCCTTTCCTGTTTCAGCTTGCCTGTGCCccatgcacaaagcgaggtccattaAGACAGGTTTGAAGAGTCTGCTGTGGAGGAAGTccagtgacctgcacagagcagaCCGCAACCCCAATGAATACCTTTGGAATTAATTAGAAAGTCAAGGCCTtcttgtccaacatcagtgcctgatctcacaaATGCTCTTTTGACTGATGGGGAATGAttttccacagacacactccaaaatcttataaaagccttcccagaagagtggaggctgttacagccCCAACGGGAGATGAcaaatccatattaatgcccatggttttggaatattatgtccaacaagctcatatagctgtgatggtcaggtgtgcacatacttctggccatatactCTAACAGGATTTGCATGAATATACAGCATACATTTGCTACAAGTTATCACATTTAACAGAGCAAACCTCGAATTGgtctttgttttcttatttttgtccTAACAAAATTGCTTTACTATACATAtcatacaaatatttaataaaatatgttgCACAGTCAATGTATTtggtttttatgttaaaaagtggaggtacatttaaaaaaaacaagaggcaAACAATATTGTGACAGTgtgataattatttttgtaaaacattaCTCATACCTAAACAATTAgatatttcttaataaataGTGCTGTTAGTTGGATAATAAACATAAGATACCAAAATGCTTCATCATATTGAGTAATTATGACAACTTTGAGAACAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362821 lncRNA upstream 90804 11648300 ~ 11661421 (+) True G306145
TU362777 lncRNA upstream 209087 11542933 ~ 11543138 (+) True G306106
TU362588 lncRNA upstream 322180 11429819 ~ 11430045 (+) True G305920
TU362571 lncRNA upstream 341929 11409531 ~ 11410296 (+) True G305903
XR_004580205.1 lncRNA upstream 397148 11352876 ~ 11355077 (+) True LOC117599893
XR_004580179.1 lncRNA downstream 83307 11837338 ~ 11843605 (+) True LOC113537887
TU362969 lncRNA downstream 168438 11922469 ~ 11922676 (+) True G306284
TU362971 lncRNA downstream 170830 11924861 ~ 11925433 (+) True G306286
TU362975 lncRNA downstream 175681 11929712 ~ 11930201 (+) True G306290
TU362980 lncRNA downstream 183153 11937184 ~ 11937411 (+) True G306295
XM_034314328.1 mRNA upstream 80766 11608922 ~ 11671459 (+) False fbln2
XM_034314327.1 mRNA upstream 80766 11608923 ~ 11671459 (+) True fbln2
XM_034314329.1 mRNA upstream 80766 11608924 ~ 11671459 (+) False fbln2
XM_034314330.1 mRNA upstream 80766 11608924 ~ 11671459 (+) False fbln2
XM_026932743.2 mRNA upstream 168776 11543739 ~ 11583449 (+) True hdac11
XM_026932863.2 mRNA downstream 39980 11794011 ~ 11797434 (+) True barx1
XM_026932864.2 mRNA downstream 39986 11794017 ~ 11797434 (+) False barx1
XM_026932911.2 mRNA downstream 313593 12067624 ~ 12096756 (+) True alpl
XM_026932486.2 mRNA downstream 423059 12177090 ~ 12185144 (+) True nmur3
XM_026932640.2 mRNA downstream 511674 12265705 ~ 12413095 (+) True ephb2b
TU362774 other upstream 236412 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 271125 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 425865 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 436789 11314184 ~ 11315436 (+) True G305863
TU362496 other upstream 530710 11215015 ~ 11221515 (+) False dynlrb1
TU363207 other downstream 703570 12457601 ~ 12462536 (+) True G306480
XR_004580240.1 other downstream 2616757 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 2760579 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 4735330 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 4735330 16489361 ~ 16494139 (+) False amigo3

Expression Profile