RNA id: TU363205


Basic Information

Item Value
RNA id TU363205
length 285
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G306479
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12437199 ~ 12448374 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaggcctggcaaagcatctcaagggagcatttggtgatgtccatgggttccagacttcaggcagtcattgataGCAAAGggttgcatccaagtattaaaaataatcctaatatttatgattgttagtttgtccaatttcttttgagcctgtgaaattGGAGAGACTCTGcagaaaatggctgtaattcctacactacaccacaccacaatggattgaaatatatattctatctatctatctatctatctatctatctatctatctatctatttatctatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363193 lncRNA upstream 141470 12295369 ~ 12295729 (+) True G306470
TU363175 lncRNA upstream 147442 12284951 ~ 12289757 (+) True G306452
TU363151 lncRNA upstream 282649 12154295 ~ 12154550 (+) True G306433
TU363147 lncRNA upstream 285030 12143548 ~ 12152169 (+) True G306432
TU362985 lncRNA upstream 494906 11942035 ~ 11942293 (+) True G306300
TU363232 lncRNA downstream 124048 12572422 ~ 12573759 (+) True G306503
TU363513 lncRNA downstream 349374 12797748 ~ 12797982 (+) True G306744
TU363525 lncRNA downstream 455834 12904208 ~ 12904841 (+) True G306756
TU363733 lncRNA downstream 748101 13196475 ~ 13283007 (+) True G306938
TU363732 lncRNA downstream 840415 13288789 ~ 13293439 (+) True G306937
XM_026932997.2 mRNA upstream 10166 12417610 ~ 12427033 (+) True mcrs1
XM_026932640.2 mRNA upstream 24104 12265705 ~ 12413095 (+) True ephb2b
XM_034314296.1 mRNA upstream 24104 12265705 ~ 12413095 (+) False ephb2b
XM_034314297.1 mRNA upstream 48456 12265705 ~ 12388743 (+) False ephb2b
XM_026932486.2 mRNA upstream 252055 12177090 ~ 12185144 (+) True nmur3
XM_026932892.2 mRNA downstream 25682 12474056 ~ 12485975 (+) True prph
XM_034314397.1 mRNA downstream 47935 12496309 ~ 12527278 (+) True timeless
XM_026932900.2 mRNA downstream 47935 12496309 ~ 12527278 (+) False timeless
XM_026932943.2 mRNA downstream 84862 12533236 ~ 12562741 (+) True LOC113538096
XM_026932942.2 mRNA downstream 84865 12533239 ~ 12562229 (+) False LOC113538096
TU362774 other upstream 921386 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 956099 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 1110839 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 1121763 11314184 ~ 11315436 (+) True G305863
TU362496 other upstream 1215684 11215015 ~ 11221515 (+) False dynlrb1
TU363207 other downstream 9227 12457601 ~ 12462536 (+) True G306480
XR_004580240.1 other downstream 1922414 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 2066236 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 4040987 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 4040987 16489361 ~ 16494139 (+) False amigo3

Expression Profile