RNA id: TU363207


Basic Information

Item Value
RNA id TU363207
length 4734
RNA type TUCP
GC content 0.43
exon number 3
gene id G306480
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12457601 ~ 12462536 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acataatattttatactgGAACCTTTATGGAGATGATGCCTTGGGCAATCTTTCCAACAAattaagtattaaaatcatgTGAATACAATACTTAATTTAGAATAACCATTAAACCACTTTATAATACTTTAATACAAAATTTGTAGATTTTGAGTAAGATTACAAagtaatctgtttatttaatactcattatattttatattaatttattcatatttagtagccgctttatcctggtcaggattgtaGAGAAGCTGGAGCCGATCCCAGCAACACTGGGAGGCCAATCCGTCACAGGGCACCATTGACatttaggggcaatttagcacagcATCTGCCTACCTGCATGGTTTTTGGACAatgggaggaaatcagagaacccagaaaaaaaagcaaaaaaaatgtacaaacatGAGAACATGCAAATCTTCCTACATACAATTTAATGTCActaatacaatatttaattaaaacaaaatcattatataatcttaaaatacttttaaatgtatattgttatgattacagtcattttattattttttaatgttacattgactttattattattaaaaaaatataatatttttgtttcgtTTAGTAAGTTTAGCTACGTCATTACACTGCACATTACTTTTATTCATTCCATGTAATTGTCATTATTTCATAATGtatgactttttaattttaattttaggcAGAGATTTTGTGTTAAGCCTACATCCTTGTCGAGAGAGATTTATTCATTcaacttttaaattaaaataccaaatttatttattttttgcacttgGTGCAGGTGTTGGAAACCAAATGTGTTCTTAAATACCACCGATAATACAAAATGATTTTCACTCTGAGTAACGGGACAAAACAGACAGTACACACCTGAATTTTGACTCAATAATTTATTGCGCGTCACAGTCAGAAGACGATGGAATGTGTGGTTCATAAGAGTGCAGGAGTGTACCATTAAGTATGGCACCATGTGTTCTCGAGACACTGCCAGACTTCAACAGACAAAGCACACGTACACATAGAAAGCAAGATGGTGCTCGCAATGTAAGAACGATCTCTATGCTAGTGAGAATGCTAAATCTTTGACGTGACAAGCATACTGGCAATTTAATAGGGAGAAACACTCTTAAtactcctctccctcctcctctccttctccttcaaTGGAATCAACACCAACTTCCTCATAATCCTTCTCCAGGGCAGCCATGTCCTCTCTGGCCTCAGAGAACTCGCCCTCCTCCATACCCTCTCCTACATACCAGTGCACAAAGGCACGCTTAGCATACATCAGGTCGAACTTGTGGTCGAGCCTGGCCCAGGCCTCTGCAATAGCTGTGGTGTTGCTAAGCATGCACACAGCTCTCTGGACCTTGGCGAGGTCTCCACCAGGCACCACAGTGGGTGGCTGGTAGTTGATACCAACTTTAAAACCAGTTGGGCACCAGTCCACAAACTGGATGGTACGCTTGGTCTTGATGGTGGCAATGGCAGCGTTGACATCTTTAGGTACAACGTCACCACGGTACAGCAAGCAGCAGGCCATGTACTTGCCATGACGTGGGTCGCATTTGAccatctgattggctggctCAAAGCAAGCATTAGTGATCTCAGCCACTGAAAGCTGCTCGTGGTAAGCTTTCTCAGCTGAGATCACTGGGGCGTAGGTGGCCAGAGGGAAGTGGATGCGAGGGTAGGGCACCAAGTTGGTCTGGAACTCAGTCAGATCAACATTCAGGGCACCATCAAATCGGAGGGAGGCAGTGATTGAGGACACAATCTGGCTGATCAGCCGGTTAAGGTTGGTGTAGGTAGGACGTTCGATATCAAGGTTTCTACGGCAGATGTCATAGATGGCCTCGTTATCGACCATGAAAGCACAGTCAGAGTGCTCGAGAGTGGTGTGAGTGGTCAGGATGGAGTTGTAGGGCTCCACCACAGCGGTGGACACCTGTGGAGCTGGGTAGATGGAGAACTCCAGCTTAGACTTCTTGCCATAGTCAACAGAAAGACGCTCCATCAGCAAGGAGGTGAAACCAGATCCAGTTCCACCTCCAAAGCTGTGGAAGACCAGGAAGCCCTGGAGACCAGTGCACTGGTCAGCCTTTTGCGAATTCTGTCAAGCACCAGGTCGATGATCTCCTTGCCGATGGTGTAATGTCCACGAGCGTAGTTGTTGGCTGCATCCTCCTTTCCAGTGATCAGCTGCTCAGGGTGGAAGAGCTGGCGGTAAGTGCCAGTGCGAACCTCGATCACAGtgggctccagatccacaaACACTGCCCTGGGGACGTGCTTGCCAGCTCCTGTCTCACTGAAGAAGGTGTTGAAGGAATCGTCACCTCCACCGATGGTTTTGTCACTAGGCATCTGTCCATCAGGCTGAATACCGTGCTCAAGGCAGTACAGCTCCCAGCAGGCATTTCCAATCTGGACACCAGCCTGGCCAACGTGGATGGAGATACACTCACGctgcaggaaaagaaaaaggcaagttacagtagtagtattagtaattAATTACAACAAACCACATATTTAGAACAGAGTCAACATAAGCAAGGTTCTTTAGACCTGCCACACCTTTTGAAACTGGCAAATGAAATGGTGAAAAAAGCAATGCATGCCCACAAAAACCACACCCTTGTTTGTACTTTGTAAGCACCATTTCAGAAATTAGAAACTGCTGAACAGCAAAAATGTATGAGACactgctttcaaaaaaaaaaaaagcatgcatcACAGCATGAGCAAGTAcaaacagtgacaaaaaaaaaatcaaaattataGGCTTGTAATGCTTTTGTGAGAATTTGTATCTTCAGTGATGAACGTCGTAATATAATATGGTAAATAGTCTAGAAATGTTGAAAccatgtgtatgtttttattaatatatatataatattaatatgtaatgaTCAGGTTGTTTAACACATAGACACCTAGACGGACACCCTGACCTTGAACACCGACTCTGAGCTCTCAAAGGGCTTTTCTTTACGGGGAACACACTTTTACAAATGTATCATGCAATCCGAAATTTGTCTGTTAAATCAGGACCAGTGCTCGGTGCAGTTACATGAGAAGTAGGTCTAAGCTCGTGAAGGGCAGGTGTGGATCCCTGAATGTGCCGCAGAGGGCTGGTCTAGCCTAGATCACGCCACTTATCCCCCCCCAGCTCCCTCCCTCTTTTTCCACAgtcttctctctccttccctcttcTCCTCCCCCAGTCTCTCCATCTTTGACTCCACCCGGCTGCTACTGTGGGATTTGCACATTTCCTGCCCGAGTCGTGCCGTTGCCTGGCAACAGGACTTCAGATTGAAATGGACTGTGACAACTGGCATTGTCTATGTGTAAATAGTCAGGCTTTATACGAAATTCTCCGTGGTTGTTGTATCCCATTAGAAACTGCTTTTCATGTAGGACACAACGCATAGAACTATAACAGATAAGGACACCTATCCTCCCATCTGTTCAGTGACAAAGGGCACTTGGGGGCGATTTCTGCCTTTGTTACCATCACCACCCCCCTCCCCCGCCCTTCATGGGCTCAGCTGGGTGCCAGGGCCATCACCCCCATTCCTCTATAAGGAACTAGTACAGAAGCTAATCAGATTTACATACAAATCTCCTGATGGCGGAACCAGGAAAGCCACATAGTCGTTTACATCACAGTTAGTCAGTGTCTCCACACGAACCCTACTGAAGCTCACCAAGTGCTGCTAAAATGTAGGTCAGAACTAATACAAAGAATAAATACTCATTTCAATATTCAATGTGTATTAACTGTAGCGGCGAAAAACGGAACCACATCTCAGCCCGATGTCCATCTTGGCCTTTATGACTGTAGCGAAGATTTCGGCACGTCAGAGACAAAGGCGGGAAGCGCGCGCCGACACATTTCGCCTACGTCAGCCCCAGTCAATCttaacagaaaagaaaatggccGTAAATCCGATTAAACCAGCGATTAATCGTTTAGACTCAACTTAATGTTAAGGCAATGTATCATATGTTTGCTCTCAGGAGTTTTGTATGCAGTTATGGTCTTTTGTGTGATATCTTGCTCGTTTGAAACCGCTAAACGTTTGGTTTCTTCCCGCGCCCGCCAAGCACGAGGAGCATCAGCCGCAGCACAACCTGCGCAGTCTACATGCTGTTCAATTTAATTACAACAGTGACACGAATACCGCGTAAATAATGCGCAGACCTCAATGTTATGAGTCACTTTTTATGGGCTGTAATTTTTATGACGAATATAAAAGCATTGAAGACCGCTATTCACACGGACCTGTTTCAAATAAGtaacaacagaaaataaattatgtacaGTTTTGTTCTAAATATTACTTACCATTTTGATACGTATGAAAAGAAATCGGCTCGGAGGAAGAagagagttttgtgggtttcaCTCGCCGGTGAAGTTCGTTACCTTGCTCGACAGTTAAGAGTCGATGTAGTAACTACTTTAGTGTCCCAGTGGCGCCCCTCTTTATAAAGGCCCGCGGTGCTGAAGGGGCCGAGCTCATGATTAAACCATCACTCCTGGCCTTATGCGCGGGTTGCCAGATCGATATATTCTCACCTCCAACAACCCGTTCTTTGTGTAGACCTCTCCTAAAGTCGGGTTTACACTGCACGGTTTCGGCCTGACTTTGCTGAGTTGAGATCTGTGGTCTTAGATTACACAAGGTGACTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363205 lncRNA upstream 9227 12437199 ~ 12448374 (+) True G306479
TU363193 lncRNA upstream 161872 12295369 ~ 12295729 (+) True G306470
TU363175 lncRNA upstream 167844 12284951 ~ 12289757 (+) True G306452
TU363151 lncRNA upstream 303051 12154295 ~ 12154550 (+) True G306433
TU363147 lncRNA upstream 305432 12143548 ~ 12152169 (+) True G306432
TU363232 lncRNA downstream 109886 12572422 ~ 12573759 (+) True G306503
TU363513 lncRNA downstream 335212 12797748 ~ 12797982 (+) True G306744
TU363525 lncRNA downstream 441672 12904208 ~ 12904841 (+) True G306756
TU363733 lncRNA downstream 733939 13196475 ~ 13283007 (+) True G306938
TU363732 lncRNA downstream 826253 13288789 ~ 13293439 (+) True G306937
XM_026932875.2 mRNA upstream 3280 12434509 ~ 12454321 (+) True suox
XM_026932874.2 mRNA upstream 3280 12434512 ~ 12454321 (+) False suox
XM_026932997.2 mRNA upstream 30568 12417610 ~ 12427033 (+) True mcrs1
XM_026932640.2 mRNA upstream 44506 12265705 ~ 12413095 (+) True ephb2b
XM_034314296.1 mRNA upstream 44506 12265705 ~ 12413095 (+) False ephb2b
XM_026932892.2 mRNA downstream 11520 12474056 ~ 12485975 (+) True prph
XM_034314397.1 mRNA downstream 33773 12496309 ~ 12527278 (+) True timeless
XM_026932900.2 mRNA downstream 33773 12496309 ~ 12527278 (+) False timeless
XM_026932943.2 mRNA downstream 70700 12533236 ~ 12562741 (+) True LOC113538096
XM_026932942.2 mRNA downstream 70703 12533239 ~ 12562229 (+) False LOC113538096
TU362774 other upstream 941788 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 976501 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 1131241 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 1142165 11314184 ~ 11315436 (+) True G305863
TU362496 other upstream 1236086 11215015 ~ 11221515 (+) False dynlrb1
XR_004580240.1 other downstream 1908252 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 2052074 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 4026825 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 4026825 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 4798443 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile