RNA id: TU363732


Basic Information

Item Value
RNA id TU363732
length 4570
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G306937
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13288789 ~ 13293439 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacagtttgtggGCTGGAGGCTGTGTTTTAAGTGGACTGCGCTATGATTGAGGGACTTTTCCCTGCAGCAGAGGGACAGGCCAGAGCAGGCTTCCAGTACACAGTGGGCCCACAGGATAAGGGCGCCTTTGTTTTCAGCTCAgcagtgaaaatgagaaaatggccCCCGCCTGACTTTACTTTCAGTAATTCTGCAAAGGGATCTGCTGTGTATATTCCTCTAACTTTTGAATTCTGCATGACAATTAATGGAGACATCTCTCCTGAAACATCACCTCAATATGGTTGAACAATGTGGCCTATtactgaattaaaatataaaaaaagtaaaaattatcATCATATGGGAAGCTAATTAAATACCAGACTGTCCAGAGCACATGAAATAATGTTGGTCTAATAATTGCATAAAACTGAAACCATGTCACATTGTAGGGTGTATCCTGTGAACAAAAGAAGGTagtgaggaaaagagagagtcGTTTTCCCCAACCCCCATCTATAACTTTGCTGCAGGGCTTGCCCTTCCTCCTAGCACACAATAACAGAAACCTGAGCTGCCTTCCTTGTTGCCTCAAGCCCACGGTGTCAGGTGTCAGAGACATACTACTCATAAATAAGGAGACTGTGAAAGAATACGGGCTGGAGAGAATGGTCAAACTTCTCAAACTTGAACAAGCACACAGAACTGAACTTATGTTTATGCTGTCTGCTACAAGATCATAAACTAAATTAGCAATGAACATTTCTAAATAACTGAGATAGGCTGAAACATGTTTGAGTATCCTacttttttattcttacttGCTGACCAAGAGAGATCACGAGAAACAGAAGCAGTGTTCTGAACATAGAACAATGCGCCTTTCAAAACTTTTGAAACTGCGAcaaatcatatttattcataagcCGCCATGGTTTTGCTGAGATTTGCAGTTTTGCACACATGCTACAAGCttgggctttaaaaaaaaataccccgGCCATATTTCAAACCCACTTAAGGTGCGCGTCAAACAGAGACAATTTTATGCTGggtataaatgattttttttccagccttGGCATTGTATTAACGTGTTCTCATATTATGATGTGGGCAAATAAGAGGGGAAACCACACGTACAAGAGACTTAACTGACTTTAATGGCAAGGGCCTTGCATGTGTGAAacctaatattttttattttggtttaggCTACCAGGAAGTCGTGAACCATGAGGGTATCATCGTTTTGGTATTAGTGCTGAGTCTGACTAACAACAGCAGCACACACGACCATACTATTCtgaaaaagtgattttttcAAGTGGGAGACCTTTTCTCCAGCAGGAGCAAGGCCGTTAATCCTGAGCTACAAGGCTGGACTGGAATCTGAGATGCTCAGGATAAAATCCTCTACCAAACCATGACATTAGTACTTGGTTGAAACCATGTTAACCACACAGACTTTATCACTCAGGGATACTTTATTCTCCTGTAGGGTTACTTTTTATAATTCTACAAATTTtggtgtaatatttaaaaaaaaaatctgtttacaaattcataaattcatcaTCCAGAAGGATGTGATTTGTGCACTGACAGTAAAGAAAATGAGTTAGCTACATGCAATATGCTTCATAAACAGAAACTGTATTAATGAGAATACAGCAGATTTATTAAGAGGTTTGAAAGTGAAACAGATTACAGTTTATATCTTTGCAAATCCATTCAGAACCATGCAACTGATTTGAAAGTATATATGATCATAACATGGTCCTTATAGGTTTTATATGCCTACAATCAGATTCTGTCTCTGCTGAGTTATAACATTTGTTAGTTATTTATTGGGAAACTAAATGAGAGAGAGTCAGATAGGACCTtataaaaccaaacagaaaTCTACTTTCTAATTGGCCCAGAAGTGTACTAATGTTCATCTGAAACACAGCTGAATTGTAGATGTTGTTGAACTTTAGTACTTTACAGTCTTCATCCAGATACAATCTTATAATCCAGATAGAATCTTATAATACTTAGAccatgaaatgaataaaagtaaatgtaagtCAGGGCTTACGGATTTAAAACCAGGTCATTTGGAAAGTGCAGACAGAAATACTTTGCCATGCTGAGAATGCACCAACTGTGAGACCCTTGAGGCTCTGAGTGATTCCGttgttctctttctcacacttGTGCCCTAATTTGTGGCACACAGATCTGCCTTGCACTGCAGTGCGTTATTTGACACTAAACTGTCATGTCTTGTGTCTCATGACTGGATGTTGCTGTTCCAATGCTGAGCAGAAATGTGAGGAATGCGTGTGTGCTCCACCACAACAGAATGGAGACGCACCACAAATGGGCCACGTGTTCCACTTGCATGCCTGGAATGGGAGGAATTCAAAAGCATCAGCAATGATGCCATCCTTCAGTCCTTCTCCAAGCTGCTTGTCTCTTCCCTTGCATTTCTGTTGGCGAGGATGTTACCTGCATGGCTCTTGTTCAGCTTTTACTAGAGTTTTTAACTGCTCCTAATATAAAGCATTTGGAAGTATAGCTGTCTTCTAAAGGTGcaaacacacttcactttcACCCTGTGTACATGCGCGCACACAGCTGCTACGTGAGCgacattgttcacacactcccTTGTGTaccttatgtacatctggaggattaaaagcaaCGTTCACTAGATGGCATGTCAAAGCCTAAACATCCGTATCCAtctggtttccaagtcaaactgttgTTCAGCAACTTCATgtacagcaacattaaacagACTGACGAGCTCTTTACTTTCTGCCGTCggtgtgattgttgtcatgaccTGCatctaatctagaaaatccacaAGACTAGCactcaaaacagacctttcggtGGTTACTCGGttataacagtttttttaaattcgaACACTACGTGTAAAAGGAAAACCATTAGTGTTAGCACTCAACGCTTTTGGAAGAGTACATAAGTATGAGATTTGAAACATGATGGTACATGGTACAATCAGTTGTGGACACAatgtcacatggtgctatactgcCTCCACTATTTACGTTGGTATTGTGCCACACAGATGTGTTGCATAAATGTCTAAGTTGCACAGGCGActggcagccatcttgtgtacgtgtagttaacagcaagtataaatcagccttaaAGGCCTTATCTTTGAGGGAAATATTGTGTGTACTTCCAGGAAACTACATTTGTGAGAAAGGACATATTCTGACACTCCAAATGTTCTAAATGTGGAATTGCTACAGCTTTCCCAGTTATGCAGCTCAACAAGAAAAGGAACTAGTACATAggcagtaaatattttaaatgagacTTTGTGATCAGAATAGCAAATTATTGTTTTAGACCATCTCTCACGCTGAGTGGCTGTCTAAATTTTAGCAGCCACAGATTTTTCACCAGGCATATTTTGTTTTCAGTACATACAGAAATgttctaaaataataaacatagcTGCATGCTGCGATTGAAAGTGCAAGCCGCATCAGTGACATGTACTATGATATTTCGTCTTTAAAAAAGGCTTCCATCGTCTGACCACACCGATTTAATCATGTAACgtacaaaataataatctatGCATAAATAAGGTTAGGTAATTGCAGAGAAAGGCATAAATGTGGAAATATTGTCACCTGCCTATCCATCATTAAAAGCCTCTCATACTGTATAAATAGCCATTATGGCTGATATGaattattcatgtatttatatattgcGCAGAATGGACtgcatatataatacatattacTGTAATGAAGTTTATATAGGGAGTGTGTATTACAGCTTCCAGACCTGAGAACACAATGTGTGAATGGTAACTAGTGTGTTAAAGCACTTAGAAAATCAGAAGATAATATAAACATGTTGCACTTACAGGTGTGTAGCGAACAGGCGACTCATCTTGGCCACATGCTCGTTGCTGGGGTCCATGCTATCGTCGTTCAGTTCAATGCTGTGTTTCCTCTTACTGGGGCTGATGGGAGGAGGAGCTGTCCTGTGGTTATTGACTGTAGAAGACATGGGCTGCATTCTGGACTCCCCACGCAGTGCTGCTTCGCCTGcgaaaacacacaacacacctgcTATTAATACTGCACACTTGGGGGCTTTGGGCAAAGGCTCAGGAAAACCAAGCTTTAAAAAATTCCAGTTTACACTCATGCAGTATTACTGTAGGCAGTCCTATTTTGGGTCTCCAGCAGGTGCTGGGACTTCTACAGTTCATCAGTGGATATAATTTCTGTATTGGATTGTGTTTTACTGATAATCATGCTTCTCTAGAAGTCAGAGGTAGGTTGTGGGAAGGTACCTGGCAATAACCTTTAGTGTCGTCAAAATGAGTACTGTCATAATACATCTATGTCTGTGCCAACTTTCACAACCAATTTCACAtttatgtaaaacaaaaatgcctGCTAGGTCATTACAATGAAGCAAGTTAATCTTATTTCACTAAGCAGACAGAATTAATGGGGTGAGAGCAAGTCTTACACTCTGGAAAGATGCATTGTCCAATATAAGACTAATGTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363733 lncRNA upstream 5782 13196475 ~ 13283007 (+) True G306938
TU363525 lncRNA upstream 383948 12904208 ~ 12904841 (+) True G306756
TU363513 lncRNA upstream 490807 12797748 ~ 12797982 (+) True G306744
TU363232 lncRNA upstream 715030 12572422 ~ 12573759 (+) True G306503
TU363205 lncRNA upstream 840415 12437199 ~ 12448374 (+) True G306479
TU363757 lncRNA downstream 38248 13331687 ~ 13334245 (+) True G306959
TU363759 lncRNA downstream 39367 13332806 ~ 13333248 (+) True G306961
TU363884 lncRNA downstream 57014 13350453 ~ 13350680 (+) True G307079
TU363969 lncRNA downstream 208027 13501466 ~ 13501831 (+) True G307154
TU363977 lncRNA downstream 228570 13522009 ~ 13524054 (+) True G307161
XM_034314075.1 mRNA upstream 9688 13167155 ~ 13279101 (+) True atg7
XM_026932905.2 mRNA upstream 127097 13140570 ~ 13161692 (+) False hrh1
XM_034314385.1 mRNA upstream 127097 13140721 ~ 13161692 (+) False hrh1
XM_034314384.1 mRNA upstream 127097 13147251 ~ 13161692 (+) True hrh1
XM_034314478.1 mRNA upstream 217397 13059983 ~ 13071392 (+) False slc6a1b
XM_026932625.2 mRNA downstream 65485 13358924 ~ 13425482 (+) True syn2b
XM_026932671.2 mRNA downstream 147220 13440659 ~ 13476589 (+) True pparg
XM_026932670.2 mRNA downstream 155008 13448447 ~ 13476589 (+) False pparg
XM_026932669.2 mRNA downstream 156924 13450363 ~ 13476589 (+) False pparg
XM_026932668.2 mRNA downstream 160238 13453677 ~ 13476589 (+) False pparg
TU363207 other upstream 826253 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 1772976 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 1807689 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 1962429 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 1973353 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 1077349 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 1221171 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 3195922 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 3195922 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3967540 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile