RNA id: TU363759


Basic Information

Item Value
RNA id TU363759
length 299
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G306961
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13332806 ~ 13333248 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gccacgcctccctcactgagactgacaggcacacaggccacgcctccttcactgagactgacaggcacacaggtcacgccttcttcactgagactgacaggctcACAGGtcacgccttcttcactgagactgacaggcacacaggccacgccttcttcactgagactgacaggcacacaggatatgcctccttcactgagactgacaggctcACAGGtcacgccttcttcactgagactgacaggcacacaggatatgcctccttcactgagactgacaggctcACAGGtcacgccttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363732 lncRNA upstream 39367 13288789 ~ 13293439 (+) True G306937
TU363733 lncRNA upstream 49799 13196475 ~ 13283007 (+) True G306938
TU363525 lncRNA upstream 427965 12904208 ~ 12904841 (+) True G306756
TU363513 lncRNA upstream 534824 12797748 ~ 12797982 (+) True G306744
TU363232 lncRNA upstream 759047 12572422 ~ 12573759 (+) True G306503
TU363884 lncRNA downstream 17205 13350453 ~ 13350680 (+) True G307079
TU363969 lncRNA downstream 168218 13501466 ~ 13501831 (+) True G307154
TU363977 lncRNA downstream 188761 13522009 ~ 13524054 (+) True G307161
TU364036 lncRNA downstream 357858 13691106 ~ 13692912 (+) False ippk
XR_004580226.1 lncRNA downstream 607178 13940426 ~ 13960190 (+) True LOC117599900
XM_034314075.1 mRNA upstream 53705 13167155 ~ 13279101 (+) True atg7
XM_026932905.2 mRNA upstream 171114 13140570 ~ 13161692 (+) False hrh1
XM_034314385.1 mRNA upstream 171114 13140721 ~ 13161692 (+) False hrh1
XM_034314384.1 mRNA upstream 171114 13147251 ~ 13161692 (+) True hrh1
XM_034314479.1 mRNA upstream 261414 13060192 ~ 13071392 (+) False slc6a1b
XM_026932625.2 mRNA downstream 25676 13358924 ~ 13425482 (+) True syn2b
XM_026932671.2 mRNA downstream 107411 13440659 ~ 13476589 (+) True pparg
XM_026932670.2 mRNA downstream 115199 13448447 ~ 13476589 (+) False pparg
XM_026932669.2 mRNA downstream 117115 13450363 ~ 13476589 (+) False pparg
XM_026932668.2 mRNA downstream 120429 13453677 ~ 13476589 (+) False pparg
TU363207 other upstream 870270 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 1816993 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 1851706 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2006446 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2017370 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 1037540 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 1181362 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 3156113 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 3156113 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3927731 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile