RNA id: TU363884


Basic Information

Item Value
RNA id TU363884
length 228
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G307079
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13350453 ~ 13350680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAACAATCTATCTCTTAATGTTGATAAgactaaagagatgattgttgacttcaggaggacccGAGTAgaccactcaccactgcacatcaatgGAACTGTagagagagtcaaaagctccaagtttcttggtgtgcacatgatggaggacctctcctggactctcaacaccacctgcctagccaagaagGCCCAGCAGCACCTCCACTTCCTACGGAGGCTGAAGAGAAC

Function

GO:

id name namespace
GO:0035239 tube morphogenesis biological_process
GO:0001570 vasculogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363757 lncRNA upstream 16208 13331687 ~ 13334245 (+) True G306959
TU363759 lncRNA upstream 17205 13332806 ~ 13333248 (+) True G306961
TU363732 lncRNA upstream 57014 13288789 ~ 13293439 (+) True G306937
TU363733 lncRNA upstream 67446 13196475 ~ 13283007 (+) True G306938
TU363525 lncRNA upstream 445612 12904208 ~ 12904841 (+) True G306756
TU363969 lncRNA downstream 150786 13501466 ~ 13501831 (+) True G307154
TU363977 lncRNA downstream 171329 13522009 ~ 13524054 (+) True G307161
TU364036 lncRNA downstream 340426 13691106 ~ 13692912 (+) False ippk
XR_004580226.1 lncRNA downstream 589746 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 652928 14003608 ~ 14003831 (+) True G307272
XM_034314075.1 mRNA upstream 71352 13167155 ~ 13279101 (+) True atg7
XM_026932905.2 mRNA upstream 188761 13140570 ~ 13161692 (+) False hrh1
XM_034314385.1 mRNA upstream 188761 13140721 ~ 13161692 (+) False hrh1
XM_034314384.1 mRNA upstream 188761 13147251 ~ 13161692 (+) True hrh1
XM_034314479.1 mRNA upstream 279061 13060192 ~ 13071392 (+) False slc6a1b
XM_026932625.2 mRNA downstream 8244 13358924 ~ 13425482 (+) True syn2b
XM_026932671.2 mRNA downstream 89979 13440659 ~ 13476589 (+) True pparg
XM_026932670.2 mRNA downstream 97767 13448447 ~ 13476589 (+) False pparg
XM_026932669.2 mRNA downstream 99683 13450363 ~ 13476589 (+) False pparg
XM_026932668.2 mRNA downstream 102997 13453677 ~ 13476589 (+) False pparg
TU363207 other upstream 887917 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 1834640 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 1869353 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2024093 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2035017 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 1020108 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 1163930 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 3138681 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 3138681 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3910299 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile