RNA id: TU363977


Basic Information

Item Value
RNA id TU363977
length 1973
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G307161
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13522009 ~ 13524054 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACAAGTTAGACCTCGCTAAAGAATAACAGGTCAAAATATAGAAGAAAATGTCTTATAAACTCAataataatcattgatatgctCTCATTTTTGATTCTCAAATTATATACAACCCTAGAAAGACAAATTAAAATGGGAAATACCTGATACTCGATAAAGAGATTTAAAGCATAAATTTGAAGGATACATCTATCTTTGCTTTTTAAGAGAACGATCAGTCTACACCTTCAAATGATAAAAGCCACTGGTAGAGTTGGCACTTACGGAAAATACACAATTTCTGTTAGATGGTGAAAGCGGCATCATTAAAACAGAGTATGACTAGTATGTGAAGGGTCCCAAAGCACTTTCAGGATCGTCTGGAAATTCTGTGGGTCGGGTTTTGCTGTTAAAATATCAAACTGTGTGCGCAATTACAAGTCTTATCAAGAGCTCAGCTCCCGCAGACAACAAAACCTCGCTTAGACTTTAAACTCTCGTAAAAATGGTGACATGAAAGGAGAAGACCATTTAGAATGACGAAGGATAGATTAGTGATGGATTTGTAAAACGAACACACTGATCCAATACTGAATGTGAATCTGGTCCAACACAGGCCTGAAACACTGGACTGGTATCTGATTGATGTGTTTCATGCCATGAGTGTGTATTATGTTGATGAACACAACACGGTTCATGCATGTATGCACACAGGACAGGTCATAAATCCCACCATCAGGCCTCAGTTCCTGAGAGGATGTCGGTATTGGATCAGTGTCGAGTATCAGCCAATACTCTGAGCTTTGATATAGTATTGCAGACCAGCTTACCCTGTAGAGGAGCAGTGTGCAGTCCTGCAtttttacatgcacactttctttcttcctattctAAGAAAAAGATGGTACATGCAGCAGTTAGAAAGTGTGCAAGTAAATTTTTTCTAGAAGAACGGCAACCTTTTTTCCCTCCAAGTGCCTGGTATTTACTGTAAcaccatattttatattttatatatatatatatatatatatatagaaatgttTCTAGCGTGACAGGCTTAGCCACACTGCCTGAACACATCTGCACTGGCTGGCCGgatgttaactatatacttgtctaatgttagctaagtcaaacatactttgattttatttcacattaatgaacccaaaacattctccatttgacttgaaagaaagcgtAGGCACTGCATCTTTCATGTGAGAATCAATTCGAGACGAGAGAGACAcctacacaactgtcaatcGTTCCAGATTTGTGTCAATTGCCTCAACTGccgtttttttgtttgtttgtttggtttttgttttttttggggggttaaaaaaaactgctgttttGGTATAGTTTGAGTGACAACTCATAGCAGCATTTTCATTCTTAAGCCACTATGCCAGGAATTACTGGTTGACCCAATATTTATGATGGAGCATGTTCGAAGTTAGGTAGCTAAAACCCAGGTTATTAATAGCATATTTAATGCTATGCTGTATACCTCATCACACCAAATGAGACAGAATAAAttaagtgtaataataaaaagtgcTCTCTGGGCATGTCTTCTACTCAACTGACCTTTCTATCTACTGTGAAAGGAACACAGTCAAAtatgataattacatttttagcaAAACCAAGAAAGGTGTAAAAGGCAAGCTTTTTTTCAATGGCAATGCCAGAAGCTTATCTTCAGCTGAACAGTGAGATCCTCCTCTGCTTTGCTTTTTCTGCTCTTGTGCTTCATTCtgagaaataatttaaatacattaatgtGCTCCAGGTCTAGCAGAAGGaacttctggaaaaaaaaaaaaaaaaggcagccaTATTAGAAGACAGGCAGCCTGGTGGAGGTCAGAGTGCAAATGCTGATGTCGTCCGTGTGTGCGGCTCTGTGAAGAGACGGCTCAGACGCGCTGCGGTTGATTTTGGGAAGCGAGTGTTGCAGCAGCTCTATCGATGCCAGAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU363969 lncRNA upstream 20178 13501466 ~ 13501831 (+) True G307154
TU363884 lncRNA upstream 171329 13350453 ~ 13350680 (+) True G307079
TU363757 lncRNA upstream 187764 13331687 ~ 13334245 (+) True G306959
TU363759 lncRNA upstream 188761 13332806 ~ 13333248 (+) True G306961
TU363732 lncRNA upstream 228570 13288789 ~ 13293439 (+) True G306937
TU364036 lncRNA downstream 167052 13691106 ~ 13692912 (+) False ippk
XR_004580226.1 lncRNA downstream 416372 13940426 ~ 13960190 (+) True LOC117599900
TU364104 lncRNA downstream 479554 14003608 ~ 14003831 (+) True G307272
TU364094 lncRNA downstream 491108 14015162 ~ 14016394 (+) True G307262
TU364127 lncRNA downstream 527781 14051835 ~ 14058202 (+) True G307293
XM_026932541.2 mRNA upstream 597 13508409 ~ 13521412 (+) False mkrn2
XM_026932539.2 mRNA upstream 597 13508792 ~ 13521412 (+) True mkrn2
XM_026932540.2 mRNA upstream 597 13508794 ~ 13521412 (+) False mkrn2
XM_026932920.2 mRNA upstream 26024 13481411 ~ 13495985 (+) True tsen2
XM_026932921.2 mRNA upstream 26024 13481617 ~ 13495985 (+) False tsen2
XM_026932624.2 mRNA downstream 41015 13565069 ~ 13568953 (+) False cnbpb
XM_034314274.1 mRNA downstream 41189 13565243 ~ 13568961 (+) True cnbpb
XM_026932623.2 mRNA downstream 45035 13569089 ~ 13578359 (+) True LOC113537916
XM_026932508.2 mRNA downstream 55306 13579360 ~ 13586971 (+) True isy1
XM_026932421.2 mRNA downstream 64979 13589033 ~ 13606451 (+) True zgc:77375
TU363207 other upstream 1059473 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 2006196 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 2040909 11480669 ~ 11481100 (+) True G305955
TU362537 other upstream 2195649 11325604 ~ 11326360 (+) True G305869
TU362531 other upstream 2206573 11314184 ~ 11315436 (+) True G305863
XR_004580240.1 other downstream 846734 14370788 ~ 14476385 (+) False asic1b
TU364869 other downstream 990556 14514610 ~ 14521147 (+) False gpd1b
XR_004580181.1 other downstream 2965307 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 2965307 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 3736925 17260979 ~ 17263663 (+) True LOC113537865

Expression Profile