RNA id: XM_026932807.2


Basic Information

Item Value
RNA id XM_026932807.2
length 4682
RNA type mRNA
GC content 0.45
exon number 3
gene id dag1
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 15756890 ~ 15799890 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATATCCAAACCTGGCTGCTTTTACTTCCCATTACACTGCTCGTCTGCGGAGGAGCTGTGGAAAAGCTGAGGAATACTAATTGACTGTAGTGCTGAgctgaggaggagaggagaagccGCAGAGCCTGGACTGAGCCTGGACTGAGCCTGACTGAGCCTGGTTAAAGCCTGGTTAAAGCCTGGACAGAGGCGCTCTCCGCCGCTTGCACATCTCCGTCATGTGATTGTTCTTTCCCGCGAGTCTTtagtttagctttttttttaattaattatttttcatttacatttctgcaGCGTGTAGAGACAAACCTCGAAAGTGAACGCTGTGCTTTTTAAATGGTGGATTCGGCTTGAGATGTGTGAAAGAAGGGAAAAGGGAGTTTGTTACAGAAGAAAGCCGTTGTGTTGGTGAAAGCTGGGACAAGAACAACCTGAAGAACCATCACGACATTCACTGGGACattgtgcgtctgtgtgtgtgtgtgtgtgtgtgtgtgcgccagcgagcgcgcgcgcgcgcgtgtgtgtgtgtgtgttagtgtgttattctgctttcGCAGCGAAGACCCACTGAAGGCATTTGGCTCAAGCTTCGGAACGGTCTCAGAGGCAACTTCTAACAATGGGATTTCAGGAGTACTGAAGAGATTCTGACAAAAGGCAAGGGAAGAGAGAAAGCAGTGAGAACAAAAGAAGAGGCTTGCCGGAGAGCTGGGGGCGCTTctgaaaaaacaagaaaaggatCAGTTCTTTGGGGCTCAGCAGGGGGTGTGCATGCTGCCCCCTCAACTGGACATTCTTCTTTGTGCCAGAGTGAGACAACAAAAGCAAGTATGCGCAATAAACTGAGCAAGTTCTGGGATGCAGGCTGCTGGCCCATGCTGAGGCTGGGGAGCAGGACTATAGCGCTGCTCCTGCTGACATTCATGCTGCCGGCAGAAGCTCAGGCTTCATCACCCCAGGGAAACTTGGAGGTGCTGGGAGACATGGCACAGCTGGAGGCCTCCATGCACTCGGCAGTGCTCTCTGACCTCCAGGAGGCGCAAGCAGTAGTGTCTGCAGTGGCACAACCAAGCGGCTTCCCAGATTCCTCTGCAGTAGTGGGAAGGATGTTCCAGATACAGATCCCCTCAAAAGCCAAGGATTCTGGGAGGATAGTTAAGATTACAGAGGCAGGCAAAGATACACTACCATCATGGTTGCACTGGGAACCAATAAGCAGCACCCTTCAAGGACTTCCTTTGGAGGTAGACAAGGGTGTCCACTACATATCTGTCTCTATTGCTAATGGAGGCCATGTGTCCCAGAGTCCTGATGTATTTTCCATTGAGGTTCATCCAGAGGAACATGCTGACACAGACCCTATTCAGTTAGCAATCCAGTTAACTAATAATGATTCTCAGCATTTTGTCTGTGGCAATGAAGAGCCTGTTACCGTGCTTACAGTAATTTTGGATGCAGACCTCACTAAGATGAGCTCCAAACAGAGAGTGGAGCTTTTGGCCAGCATGAAAAAATTCTCAGGAGTAGGGCTCCAGCACATGAAGATCTTGCCTGTTGTCAACAATCGCTTGTTTGATATGTCTGCTTTTATGGCTGGGCCAGGAAATGCCAAAAAGGTTGTAGAAAATGGTGCTTTATTGTCTTGGAAACTTGGCTGTGCCCTGGATCAAAGCAACATTCCCAACATCAGCAGTGTTCAGGTTCCAGCAAAGGAAGGGACAATGTCAGCACATTTAGGATATCCAGTGGTGGGATGGTACATTGCTAACAAAAAGCCACATGTACCTAAACGAGTACGGCGGCAACTTAATACCCCTACTCCTGTGCCCTCCTTGCTTCCTCCAACAACATACCCTGAGCCATCGAGCCGCATCGTGCCCACACCAACTTCCCGATCAATTGGACCAACTTCCGACAGTTCCTCACAACCTGTGCGGGGCCCTGTACCACTGCCTGTGAAACCTACTATTCGCACCAGAGATCCAATTGCTCATACTCCCACAATAGGACCCCCTCAGCCCACAAAAATTATGGACACTACCAGCACTATTACAATACAGCCCACCATGACCAGGCCACTGTATGTTGGGCCTTCTgtaacaccatcaacaccaaccACCAAGAAACCAACAAAAAGGCCCAAGAAACCCAAGACCACCCCAGTACCGAAGGAACCTAAGACAACGACAGCCAAGCCACCCCGACGTACCACCCCCTCAGTTGTTTTACAAGATGGCAATACAAGACCAGAGCTGCGCAACCCAATTGATCAAGTTAAGTCATTCATTGGCACATACTTTGAGGTGAAGATCCCATCTGACACATTCTTTGATCGAGAAGATGGTACAACGGACAAGTTAAGATTAACTTTGAGGAAGAGCAATGACATTGTTGGAGAAGACTCTTGGATTCAGTTCAACAGCACTAGCCAGTTGCTTTATGGATTACCAGACTGGCAGCATGAGGGCAAGCATGAATACTTTATGCAAGCTACTGACAAAGGTGGTCTCTACACAACAGATGCCTTTGAGGTCCGTGTCAATCGCTTTGGAAACAATTTTAAGTCCCCAGTCCTGTTTGCTGCTCGATTCCAGGGGGATCCTCGTTCGGTTACCAATGACATCCATAAGAAGATCCTTCTTGTCAAGAAATTGGCCTATTCTTTTGGTGATCGCAATTCAAGTTcaattacactgaaaaatattaCTAAGGGATCCATTGTAATTGAATGGACCAACAGCAGCCTCCAACAACACCCATGTCCCAAGGAGCAAATTCAGGCCATGAGTCGAAGGATCTCTGATGCTGAAGGCAAACCTTCACAAATATTCTACAGTGCCATGGAACCAGACTTCAGACCCATAAATATCACTATAAAAGGAACGGGTAGCTGCCACCGCTACATGTTTGTTCCACCAGCTGAGATCCCAGACCCCGTTCCGCCTGCTGTTACACCAGCTGTAGGAGCAGGACGACAGAGCAACGATGATGTATATCTTCACACAGTTATACCAGCTGTGGTGGTTGCAGCGATCCTGTTGATTGCAGGTATCATTGCTATGATTTGCTATCGCAAGAAGCGCAAGGGGAAGCTTACCATTGAAGACCAAGCAACCTTCATTAAAAAAGGAGTTCCCATCATTTTTGCTGATGAACTTGATGACTCTAAGCCACCTCCATCATCTAGCATGCCCCTTATCCTCCAAGAGGAAAAACCTCCTCTCCCACCACCTGAGTATCCCAACATGGCCAGTCCAGAGACCACACCTCTGAACCAAGACATTTTGGGAGAATATTCAGGCCTACAAGATGATGACCCCAATGCCCCTCCTTACCAGCCTCCACCCCCCTTCTCTGCTCCTATGGAGGGTAAAGGGTCACGCCCTAAGAACATGACCCCATACAGATCACCACCCCCATATGTGCCACCCTAATGTTTATAGATCCCTCCAGTGTGGAGGACAGGGAACTTGTGCAGTTCCAAAACCAGTGTTGtctctttgcatttttttggaaATCGGAGGGGCATTACAATTTGGGACATTGGATTGGGAGGGTTGGGATGATTTTGGTAAAACTGGACTTTTTTTTGGAGTGGTGATGGTGGGGGTGTAATTATATAATCCTCAAAGACAGCAACAACAACCTCAGCCTCTGGCTGTCTGGCTACTGCTGATCAGTTGGAAGATGCACCCTCCGATCCTAGCGCTTTTGTGTCTAGatgggcttttttttgtttgttttatcatttgtatttctttttgacTTACTTCAGAATCAAACTACTTGCCTAACAGCACTCTTTTTATCTTCTGAACTCTTTGGATAATACATAAAGACAATAAGTAAAGTGACTGCAGGTGCAAGTGTTTCATAGTGACATTCTacaattaaggaaaaaaaaacatgacctaGAGGTACAGTTGTGCAGACAATTATGGGCTTGTTTGATTCAATAAGGTTTGCCTTTTAACATTAATTGTACTGTTTTACCCTTATTCACATGTCTAGTAAAGATGAGCATAATAAGAGGTAGCCAAAAACCTTGAGAGGGATAGAACCTTTTTGTTTAATCCACTGTAAATTTGAGGGTTgctagatttctttttttcttttctttttccttttcctttttttttttttttttttttttttggtgggtgTCAAAGCAACAGtgaaaaaatcttttatatCCCTACTAATGGAAATGAGTTATGCTATGGATATGTTCTGGATAAATGTTTGAGgatgtgtgtttctgtcctTATAGAGATTCATGCCAGACTGAGACATGGAGATATTATTGTGCcattctgattttgattttgattttttttgggttttatgTCTGTTTCGATTTATAGTAAGGATATATGGCATGATGTAGCTGCTGCCCTTGGAAGGAAACATAAATGGGCAAAGTCTGAATACCTACATCTCACAGCAGGCATTTGCTACTCATTTCCCCTTTTAGTACGCATTGACATGGTTTTGATTAAATGATTTGAAAGACTCACAGTCTAGCCTaaaattttcaaatgatttgATCCTCTTTtatggtttgtttttatttgtttgttttttttttttacttttcaataATGATTATCGAGTGTATGCCTTGACtcaaaataactgaaaataaagactgaatattttaataaagtatcATTCTCTAA

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0007016 obsolete cytoskeletal anchoring at plasma membrane biological_process
GO:0016203 muscle attachment biological_process
GO:0043113 receptor clustering biological_process
GO:0033292 T-tubule organization biological_process
GO:0042383 sarcolemma cellular_component
GO:0016010 dystrophin-associated glycoprotein complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0043236 laminin binding molecular_function

KEGG:

id description
K06265 DAG1; dystroglycan 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU365380 lncRNA upstream 352200 15412099 ~ 15413822 (+) True G308404
XR_003403808.2 lncRNA upstream 358381 15393609 ~ 15407641 (+) True LOC113537967
TU364954 lncRNA upstream 965880 14798973 ~ 14800142 (+) True G308018
TU364930 lncRNA upstream 985264 14699997 ~ 14780758 (+) True G307997
XR_003403804.2 lncRNA upstream 1002848 14760831 ~ 14763174 (+) True LOC113537908
TU365710 lncRNA downstream 78578 15874005 ~ 15875206 (+) True G308707
TU365743 lncRNA downstream 197968 15993395 ~ 15994043 (+) True G308737
TU365764 lncRNA downstream 225789 16021216 ~ 16022142 (+) True G308758
TU365769 lncRNA downstream 232462 16027889 ~ 16028286 (+) True G308760
TU365773 lncRNA downstream 241989 16037416 ~ 16037632 (+) True G308764
XM_026932439.2 mRNA upstream 376894 15385294 ~ 15389128 (+) True rbm15b
XM_026932414.2 mRNA upstream 383074 15375847 ~ 15382948 (+) True manf
XM_034314021.1 mRNA upstream 397892 15174773 ~ 15368130 (+) False dock3
XM_026932784.2 mRNA downstream 68029 15863456 ~ 15877266 (+) True nicn1
XM_026933001.2 mRNA downstream 693934 16489361 ~ 16501684 (+) False amigo3
XM_026933000.1 mRNA downstream 693934 16489361 ~ 16492648 (+) True amigo3
XM_026932620.2 mRNA downstream 877393 16672820 ~ 16687543 (+) True ccdc66
XM_026932622.2 mRNA downstream 877393 16672820 ~ 16687543 (+) False ccdc66
TU364869 other upstream 1244875 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 1289637 14370788 ~ 14476385 (+) False asic1b
TU363207 other upstream 3303486 12457601 ~ 12462536 (+) True G306480
TU362774 other upstream 4250209 11515059 ~ 11515813 (+) True G306103
TU362623 other upstream 4284922 11480669 ~ 11481100 (+) True G305955
XR_004580181.1 other downstream 693934 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other downstream 693934 16489361 ~ 16494139 (+) False amigo3
TU366607 other downstream 1465552 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 2891970 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 2892026 18687453 ~ 18692014 (+) False snrpe

Expression Profile