RNA id: TU366076


Basic Information

Item Value
RNA id TU366076
length 214
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G309056
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 16595137 ~ 16595350 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGTATTGAGGTTTGCTCAGTGCTCATGGCCAGCTGCTGTGAAATCACAAATTCTTCTGTCTTAATGTTTTATGGGCTGGTAGTAAAAATGTAACACTCGGCCAAACAACACACATTCAGAATGAAGCATTACTGATTTAACCCTTTGATCAAACAGCACACTTTTTCCTTCTCTAACTTGGGTTAGTACTGGGGGTGCATTTGAGGTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU365925 lncRNA upstream 289134 16305796 ~ 16306003 (+) True G308915
TU365836 lncRNA upstream 474848 16119831 ~ 16120289 (+) True G308827
TU365831 lncRNA upstream 482130 16112799 ~ 16113007 (+) True G308822
TU365819 lncRNA upstream 493296 16101612 ~ 16101841 (+) True G308810
TU365808 lncRNA upstream 504607 16090317 ~ 16090530 (+) True G308799
TU366173 lncRNA downstream 201781 16797131 ~ 16879737 (+) False G309135
TU366175 lncRNA downstream 201781 16797131 ~ 16882513 (+) False G309135
TU366176 lncRNA downstream 201781 16797131 ~ 16879737 (+) False G309135
TU366213 lncRNA downstream 266796 16862146 ~ 16864645 (+) True G309170
TU366172 lncRNA downstream 282235 16877585 ~ 16879737 (+) False G309135
XM_026933001.2 mRNA upstream 93453 16489361 ~ 16501684 (+) False amigo3
XM_026933000.1 mRNA upstream 102489 16489361 ~ 16492648 (+) True amigo3
XM_026932784.2 mRNA upstream 717871 15863456 ~ 15877266 (+) True nicn1
XM_026932807.2 mRNA upstream 799710 15766022 ~ 15795427 (+) True dag1
XM_026932810.2 mRNA upstream 799710 15766651 ~ 15795427 (+) False dag1
XM_026932620.2 mRNA downstream 77470 16672820 ~ 16687543 (+) True ccdc66
XM_026932622.2 mRNA downstream 77470 16672820 ~ 16687543 (+) False ccdc66
XM_026932444.2 mRNA downstream 286652 16882002 ~ 16891308 (+) True atp6ap1la
XM_026932443.2 mRNA downstream 297881 16893231 ~ 16897114 (+) True pde12
XM_026932739.2 mRNA downstream 315055 16910405 ~ 16912976 (+) True LOC113537970
XR_004580181.1 other upstream 93453 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 100998 16489361 ~ 16494139 (+) False amigo3
TU364869 other upstream 2073990 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 2118752 14370788 ~ 14476385 (+) False asic1b
TU363207 other upstream 4132601 12457601 ~ 12462536 (+) True G306480
TU366607 other downstream 665629 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 2092047 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 2092103 18687453 ~ 18692014 (+) False snrpe
TU367971 other downstream 2491675 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 2912905 19508255 ~ 19517159 (+) False phf13

Expression Profile