RNA id: TU366176


Basic Information

Item Value
RNA id TU366176
length 1362
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G309135
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 16797131 ~ 16882513 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttttttttttttttttttttttttttTGTAATTGAAAAACTTTGATTTATTGTGTTCTGGGCATTACTTATTTATGACCTAGGTCTCTCCTTCTTGCCTTTGTAGAGGGCCAGGAGAGAAACGTTGGCCACCTTCACCACCTTGAAACGTACTCCAGGGATATCACCGACGGCGTGTCCCTTACGACCGAATCCTGCCACCAGAACCTCATCGTTCCTCAATGAAATTCAGGCAACCGTCGTTGGGGACGAATGCAGTGATCTTCTTGCCGTTCTTGATCAGCTGGACTCGGACACACTTCCTAATAGCAGAGTTGGGCTGCTTGGCTTCAACGCCGCTTTCTCAAGCACGATTCCTTTGGCGTGTGAAGCGCCTCCAAAGGGGTTAGCCTTCAGGGCTGTGCCCAAATGGGCCTTCTTGTACTGTTTATCATGCCACTTCTGCTCACGGCGGTGATCCCGCAGCTTTCTGGCAGTACGCAATCCACGGCACTTACCTACAAGACACAAGAAGAAGTAAGACACAGGCTGGATCTCAGACTTACCACAAATAATGTCCTGTTAGAGTGCACATGTAGTTAGTGATGTacaatattaaagaaaaacacgaTATGCGATAACTCgttaaataatgcgatatgcGGTACAATAATCCTATAAGCATGTAAAAtcaatttacattatatttatttatttaaaagctgaaaatgacataaccaacatacatgtttcCTGTTCTTTTGAGATACATGAAAGAATTCGCTGCTATCTGCCTCGCCCAAAAACTGTGacttctttaaatattaaaatcaatcATTTATCGCAAGCCCTTGCGATATGCATACCGCGatatttcgatatattgtgcagccttACATGTAGTGTAAATAGAGTATTAAGTAAGTAAGAGTAGTGCACTCCATGTTAAACAGAAAGCCATTCACAACACAGCCGCATCTCTATACACATTACCTAGGCTTAATAGGTGACATAGCTATTTCATTTCAACACTGTTATAAACCTCAAATGCgatacaaacacattttcatcACTTATTTGGACTTATGACtgatttaataacattatttggGCTGAATCCGCCGCGAGCGCTTAGTGAAGCTCTGTTAGCCATGTTAGCTCACAATATGGCGTGGCGGCTCTCCACGTTGTCgcgaaataaataattaaaattcttATGACTACACCACAAATACACGATTTACCAACGAGTTCGAGTGTATAACTGCATTATCTtggtatatatattattattaaaacgcATTTTAATCGTATAACGCTCATTTAAAGGAAGTTTAAATTCGACTAAAGCGCATACCCATGTCGGCTCGATGGAAGTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU366076 lncRNA upstream 201781 16595137 ~ 16595350 (+) True G309056
TU365925 lncRNA upstream 491128 16305796 ~ 16306003 (+) True G308915
TU365836 lncRNA upstream 676842 16119831 ~ 16120289 (+) True G308827
TU365831 lncRNA upstream 684124 16112799 ~ 16113007 (+) True G308822
TU365819 lncRNA upstream 695290 16101612 ~ 16101841 (+) True G308810
TU366233 lncRNA downstream 23444 16903181 ~ 17000024 (+) True G309184
TU366237 lncRNA downstream 24120 16903857 ~ 16904257 (+) True G309187
TU366244 lncRNA downstream 38262 16917999 ~ 16919155 (+) True G309194
TU366254 lncRNA downstream 88659 16968396 ~ 16969437 (+) True G309201
TU366262 lncRNA downstream 135899 17015636 ~ 17016244 (+) True G309208
XM_026932620.2 mRNA upstream 109588 16672820 ~ 16687543 (+) True ccdc66
XM_026932622.2 mRNA upstream 109588 16672820 ~ 16687543 (+) False ccdc66
XM_026933001.2 mRNA upstream 295447 16489361 ~ 16501684 (+) False amigo3
XM_026933000.1 mRNA upstream 304483 16489361 ~ 16492648 (+) True amigo3
XM_026932784.2 mRNA upstream 919865 15863456 ~ 15877266 (+) True nicn1
XM_026932444.2 mRNA downstream 2265 16882002 ~ 16891308 (+) True atp6ap1la
XM_026932443.2 mRNA downstream 13494 16893231 ~ 16897114 (+) True pde12
XM_026932739.2 mRNA downstream 30668 16910405 ~ 16912976 (+) True LOC113537970
XM_026932993.2 mRNA downstream 64727 16944464 ~ 16998819 (+) True slmapa
XM_026932992.2 mRNA downstream 64727 16944464 ~ 16998819 (+) False slmapa
XR_004580181.1 other upstream 295447 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 302992 16489361 ~ 16494139 (+) False amigo3
TU364869 other upstream 2275984 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 2320746 14370788 ~ 14476385 (+) False asic1b
TU363207 other upstream 4334595 12457601 ~ 12462536 (+) True G306480
TU366607 other downstream 381242 17260979 ~ 17263663 (+) True LOC113537865
TU367680 other downstream 1807660 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 1807716 18687453 ~ 18692014 (+) False snrpe
TU367971 other downstream 2207288 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 2628518 19508255 ~ 19517159 (+) False phf13

Expression Profile