RNA id: TU367661


Basic Information

Item Value
RNA id TU367661
length 2140
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G310420
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18613515 ~ 18615654 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGTCTTtcaacattttgtaattttattagtTAAATGACAGGGGGTAAATTGGGGTTTACAATTATCAGTCAAACCTTTGCTTACAAATGACTGACATTTAACAGCAGCCTGATAAACAAAGCAGAAAGACGGGAAAATATGGTAATGACGACTTGATGTGTTTACAATCATTACGGCAATGTCAAAGGCTAAATCTCTTGTCTGTTAAATCTCTTACGCCTGAAATCCTCACTGTGCTTATGACCGATCCCTGTGGAACTCCAGTGACTGTGGGAATGCAGCTTCATGCATTCACGCCCTGTTTTCTGTGGTTGAGAAAATTTGAATCATGTTTCGGAAGTAAGTGCATTCCTTTGTGTTTGCTGTATCTCTCGTTCAGCATTTGGTGTTAGCTTGGATAAAAATGCAGCCAGATGTGCAAaatacattaacaaaccaaaaatgcaacagcaaatccgaaaatacagtaacaaaacaaaaagcactttcagaaacacaaaatttaaaaacagaaagaatagGTCCTTTAGTGTTGTAATGTAATGCCACTGTCTGTATctatatctgtttagtgctaaatattcatatctgtatttggatttaagcccaaagtgggtgtggcctaaactggaagtgTAAATGGGCCCAAGCTGGGAATACACCTCAgatgggaagccagtccatcgcagggcaccgtgaacactcacattcacacctaggggcaatttagcatagccagtctacctacatgtttttgggaggttgaaggaaaccggagaacccagagtaaACCCACACAGGCACAGGAAGATCATTCAAAACTCTGTACAGACTATAACCTGAGCTCAGTAACTTGCAGAACACCCCTTCTGCTTCTCACCCCAGAAGCGGTATCTGAGTACATAGCTGTATACTACTAAtattgaactggggaccctggaggcTGTGAGTTGATATCATCACAGAGTGAATGTCACCCAGAGTAAATTCATGTAGGTTCATATTTCCTGTTACTCTAAACATCCTCCAGGTCTCCGTCTTCTATCATCTCTCAGACTGATGTAGAgtgtagccaatcagcaacgagCATGTGATGCTCACTAAGGACCTCCCATTTCCATTTTGAGTTAATGTTGTTAATGCTGTtgcgtttttggttttgctgtcatGGTTATGGTTTGTTAATATGTTTTGCCACCATAATCTCATCAGCGTATGGTTTTACTCAAGTTCAATAACTAGTTTTCCCTCATCGTCGCTGCTGCTGgacctctcctcctcctccatgtaGCTGTGTGGAGCATTAGGATCTGTAGGGTTACTCTGTATGCTGGATGTACATGTTGGATTTGGATGTATGCAAGAGCTGTTAGTCTGGTTTGAACATGAAGGACGTGTGTATGCTGGTGCGGTTTTTATTATCTGACAGTGTTCCGTGTTGCAAGGCGATATCATGCAGGGTTCATTCAGCATACTGATTTGTGCTGTTCCATCTGTTTCTTGCTCTGGCAATGGCCTTTGCACTTGCAAGCTTGTTGAATGAATCAGTCCCTTTGCAGAGTTTTTGGTTTGTGTCTCTTTTTGGACCTCCTTCTGAATGGCATTCACCAAAAGGGGATGAGCCAAGAGATGCCTCACGTCACCATGTCCTCTGGATAATGATGTAAAACTTTTACAATGTCCAAGAGGAGCGTGCTCCTTCACTTTTGTGTTACTTTGGTGAGTTTGTTTTGGAGCCGCTTGAGCACTGGGACTGTTTTCTCTAACATGACGTTTGTTGGTGTGACACTTGCTTTCAGGTGAAGGGTTGGTTATTCCACAGATTGCCGATGTAGTGCTGATGGAAACAAGCTCAGGTGATGCTGCGTTGATGTTAGTCACGTGTTGGGATGTGGAAAGGTCCGGATGTGGTTTCACTGTTGTGTGGTAGCTTTCAGTGCATTTTGCCTCCTGCTTGAAACACAGAtacatgaaaacacaaaacacaggctGAATAATGTCAGAATCTCAAAACGTGATATTATTCACTTCATAGAGTAAATAGTCAAAAGGGAGGAGCACTGTGTTGTGCCTGTAACACACCCTGCCCGCCATTTatacctttaaacacaaacaaacttgGCAGCATTATCTAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367657 lncRNA upstream 10935 18602378 ~ 18602580 (+) True G310416
XR_003403812.2 lncRNA upstream 11791 18596516 ~ 18601724 (+) True LOC113538055
TU367378 lncRNA upstream 142491 18467803 ~ 18471024 (+) True G310183
TU367413 lncRNA upstream 168481 18444085 ~ 18445034 (+) True G310208
TU367402 lncRNA upstream 182925 18427425 ~ 18430590 (+) True G310201
TU367662 lncRNA downstream 1036 18616690 ~ 18617001 (+) True G310421
TU367666 lncRNA downstream 16061 18631715 ~ 18631944 (+) True G310425
TU367692 lncRNA downstream 123312 18738966 ~ 18809037 (+) True G310446
TU367817 lncRNA downstream 284606 18900260 ~ 18906623 (+) True G310547
TU367819 lncRNA downstream 289175 18904829 ~ 18906623 (+) False G310547
XM_026932780.2 mRNA upstream 48704 18560022 ~ 18564811 (+) True pdrg1
XM_026932835.2 mRNA upstream 54834 18553402 ~ 18558681 (+) True si:ch211-266k22.6
XM_026932836.2 mRNA upstream 54834 18553402 ~ 18558681 (+) False si:ch211-266k22.6
XM_034314062.1 mRNA upstream 54834 18553402 ~ 18558681 (+) False si:ch211-266k22.6
XM_026932441.2 mRNA upstream 72789 18501272 ~ 18540726 (+) False phactr3b
XM_026932410.2 mRNA downstream 21939 18637593 ~ 18645518 (+) True hp1bp3
XM_026932543.2 mRNA downstream 31057 18646711 ~ 18654039 (+) False sh2d5
XM_026932545.2 mRNA downstream 31090 18646744 ~ 18654039 (+) False sh2d5
XM_034314340.1 mRNA downstream 31124 18646778 ~ 18654039 (+) True sh2d5
XM_026932544.2 mRNA downstream 31161 18646815 ~ 18654039 (+) False sh2d5
TU366607 other upstream 1349852 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2111831 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 2119376 16489361 ~ 16494139 (+) False amigo3
TU364869 other upstream 4092368 14514610 ~ 14521147 (+) False gpd1b
XR_004580240.1 other upstream 4137130 14370788 ~ 14476385 (+) False asic1b
TU367680 other downstream 71743 18687397 ~ 18692014 (+) True snrpe
TU367679 other downstream 71799 18687453 ~ 18692014 (+) False snrpe
TU367971 other downstream 471371 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 892601 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 1153336 19768990 ~ 19783913 (+) False vamp3

Expression Profile