Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026932794.2 |
| length | 580 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 5 |
| gene id | snrpe |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 18687397 ~ 18692014 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0019013 | viral nucleocapsid | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU367666 | lncRNA | upstream | 55498 | 18631715 ~ 18631944 (+) | True | G310425 |
| TU367662 | lncRNA | upstream | 70441 | 18616690 ~ 18617001 (+) | True | G310421 |
| TU367661 | lncRNA | upstream | 71788 | 18613515 ~ 18615654 (+) | True | G310420 |
| TU367657 | lncRNA | upstream | 84862 | 18602378 ~ 18602580 (+) | True | G310416 |
| XR_003403812.2 | lncRNA | upstream | 85718 | 18596516 ~ 18601724 (+) | True | LOC113538055 |
| TU367692 | lncRNA | downstream | 46953 | 18738966 ~ 18809037 (+) | True | G310446 |
| TU367817 | lncRNA | downstream | 208247 | 18900260 ~ 18906623 (+) | True | G310547 |
| TU367819 | lncRNA | downstream | 212816 | 18904829 ~ 18906623 (+) | False | G310547 |
| XR_004580273.1 | lncRNA | downstream | 222281 | 18914294 ~ 18964490 (+) | True | LOC117599928 |
| XR_004580274.1 | lncRNA | downstream | 222281 | 18914294 ~ 18959567 (+) | False | LOC117599928 |
| XM_026932914.2 | mRNA | upstream | 16983 | 18654169 ~ 18670459 (+) | True | kif17 |
| XM_026932916.2 | mRNA | upstream | 16983 | 18654169 ~ 18670459 (+) | False | kif17 |
| XM_026932915.2 | mRNA | upstream | 16983 | 18654169 ~ 18670459 (+) | False | kif17 |
| XM_026932543.2 | mRNA | upstream | 33403 | 18646711 ~ 18654039 (+) | False | sh2d5 |
| XM_034314325.1 | mRNA | downstream | 16729 | 18708742 ~ 18741557 (+) | True | LOC113537968 |
| XM_026932735.2 | mRNA | downstream | 16729 | 18708742 ~ 18741557 (+) | False | LOC113537968 |
| XM_034314326.1 | mRNA | downstream | 23208 | 18715221 ~ 18741557 (+) | False | LOC113537968 |
| XM_026932736.2 | mRNA | downstream | 23208 | 18715221 ~ 18741557 (+) | False | LOC113537968 |
| XM_026932730.2 | mRNA | downstream | 30832 | 18722845 ~ 18741557 (+) | False | LOC113537968 |
| TU366607 | other | upstream | 1423779 | 17260979 ~ 17263663 (+) | True | LOC113537865 |
| XR_004580181.1 | other | upstream | 2185758 | 16489361 ~ 16501684 (+) | False | amigo3 |
| XR_004580182.1 | other | upstream | 2193303 | 16489361 ~ 16494139 (+) | False | amigo3 |
| TU364869 | other | upstream | 4166295 | 14514610 ~ 14521147 (+) | False | gpd1b |
| XR_004580240.1 | other | upstream | 4211057 | 14370788 ~ 14476385 (+) | False | asic1b |
| TU367971 | other | downstream | 395012 | 19087025 ~ 19087806 (+) | True | G310681 |
| TU368136 | other | downstream | 816242 | 19508255 ~ 19517159 (+) | False | phf13 |
| TU368156 | other | downstream | 1076977 | 19768990 ~ 19783913 (+) | False | vamp3 |
| TU368157 | other | downstream | 1076977 | 19768990 ~ 19783913 (+) | False | vamp3 |
| XR_004580241.1 | other | downstream | 2178639 | 20870652 ~ 20882365 (+) | False | hnrnpa1a |
