RNA id: TU367692


Basic Information

Item Value
RNA id TU367692
length 3246
lncRNA type read_through
GC content 0.40
exon number 2
gene id G310446
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18738966 ~ 18809037 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttttttttttttaattttctgtgctCAGCACAATCCATTCTGCTGGCCCCATTGTAGCATAAAGCATAACATAAAGCAAAGACAGATCTTCCACTTAAAACACACGAGACAAGTGAAGTCCCTAAAATTTAACTCTCAGGGGGGTTAcaagtgagtctgtgtgtgtttgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtatcttcaCAGTGGTGCCAACATTACTAGATCAGAGGCATTCAACTACAAATTGTAAAGGTCCCTTAACATAAAATTTCTGGTTTAAAGGTTCAGATAAGCAGCTAACACGACCGAATGGCAAGATCAGTTACCTTTAAATGCTTAGCCATAAATGATTTGCTTATTTCATAGTGGTACTAACCACTTTTTAAATAGTGCCATGGATGGGGCTGTGGTTAAGAAAGccattgtcaagtccaagaccaggacaaGATGAGGTCGAGTCAAGACAGAATCTTaatgaaagtgagacagagtcAAGATTGAGACAGAAAACCATCAAGGCCAAACCTTTACTTCAGTTAGCTGGCTTCATTAATGCATTGCGCCAGTGATTAGGCTGTTTTCTAAAAGaggcattactctctctcccctgtcacactagccaatcatgggcgcctgtgagctcatgtattcGCTTATTTCATAGTATTGTTTCATAACAGTGCTTCAcgtaaacactttttaaatagTGCCATGGATGGGGCTGTGGTTAAGAAAGAAactgtcaagtccaagaccaggactggATGAGATCAAGTCACTGAGTGTCACGCCGCCCtctgacgcagcatgagcagcagtttgaaaagatgtagtgtctcaaaggaagcacatgttagtcTTCACCCTCCTTGATCAGTAGCTGTAGTATGATAGGCAAGAGCTgtctgatgggtgggaattggctaTTTGggacaaaatggagaaaaatcttTACATATGTATGCGAAAAGAAagcacaaacattatttttatagtcTCTTGTTTGAGACCAAGATCATATTTGGCTAGAACAATGTCCAAGACCGAAGTGTGTCCAAGTACAAATAAATGCCAATAAGCCTAATAAGTCCAAGTCTACacagaaaacatttcaaaaccAGACACAAGTCATAAAGCCCTAGCTACAGACTCTGGACACATAAGATGCACATCTAAGCCTATTTTGAATTAGTAGCCGAGAACAGACGCATACTTTTGTCAGTCCCGTAATCAGATCAggtacaaaaaaagaaaaatctgtgaaagtctgtgaaactaCAGACTGCAGCCATCATACCTGGatcagctctgctacagtattttttgagTGCTTATTTTGGTCTGTTGAATTATTCTGTTGGATCAGTTGATCTAGCGTATCATAACTTAAATGATTAACAGCCCATTGTATGCTGTGCTTTTACCGACCGGAGACCACAGCCCCGCCCACTTGTTTTATACTGTTCACAAAGCCTACAGAAAGGTTTGCGAATTCACTGATGAAAATTCACCAAGTTAAAGTTGGCACAAGGGGAAAGAAACCACAACCAGAAGCAAATGAGGATCTTTCACatcctgtgtcctttccccttcggtgatttctttttggctgaaaaaacagaaaagcttctttttttaagagTCTTCCATATTGCCCGAGCAAGGgatcaaaaatcataaattctATGGCTAAATCGTAAATGATGGCACCTCTGTGTACATGTATTAACTAGTGATTAAAAGAAGTTAAAGGGCTCCTTGTTCTAAAGCCTAGTACCGAAGATTATCTGCTCTTATAGGACAAACCATTAGCAAGTTCAAGTTTTCATAGGGTGGTATtcacataataaaaaaacaaaacaaaacaaaacaaaaaacccattATACCCTTATAATCTTCATTCAGGTCTTCTAGTCATGAATGCATCAATGACTTTAAGTCAAATGTGGGCACGAACCCTTTTGGCTCATCTCTGAGAAGGccagcatttctttttctgaaaTCCCATCCCATCCCTTCATGCAGCGGATCTGCATTACAAAGTAGCCCTTTTAAGCTTTGTAGCACGGTTATTAAGAAGACAGTTTAATAGAAAATGTTACATGCTCGCAAAGAATCCGAAAAAACAAAGCACAGCGATACTTGACCTGCTCACTTTCCTGTGACTCTGCCTGAAAGTGAAGTGGATAGCCATAAGTGGTGCATTTATTTCTCTAATCGTACAGTACAGGAGCTTTTATTACCAGCAGTCTTGCATCATTTTAATCCTATTTCATAATTCATGGTGGAGGTGATGGCACAGGCGTGTACGCTGTGGTATATCTGAACTCGAtctgatattaaattaaactgcTGCTCACGCAGCTAGGTGTGTAAAAGACTTCTTGCCTTGTGTTTTGCCGATAGAGAAAACAACTAAATTGTGGCAGTGCACAATTGCTTAAcagatttcaaatgaaaaacaataacgTGAAGTTTACCATTTCTGTCTTAGTAGAAAAAAACTGCTTGGAACCTGAAAGCTGATTTGTTCCATCGTCTGTGAGCTAAGAGCGCTTGCTTGTCGCTCAGAGATTTAAAATGTTCCAGTTTTCCAACTTTTCAAAGATTAATGAGGAACTTAAGAGGTAATCAAAGCATACTCAAGGTCACTTTGCTGTGGTCTGGAAACTTCCACTAATTGCTTCATTTATATCACTTACACATAGAGCACTTGGTGTCTGAGCATCCTAATTCTCATGAAAACTTCAAGTTTAAGTCGACCTTTCCTTTTAAACCCCACCACGTTGCTGCCAACACCTCTGAGCATAAAAAGGGGCTGAACATCCCCATTGAAAAATAATGAGGATTCCTGTTCTCCCACGAGAAGATAAGCCATAATGTAATAATCATTACATACCACTACTACAGCAATAGTATTAcgagttattattataatcatagtGGCTATTGTAGCCATAATATCACAGATCTCATTGtggtgattcttttttttttttgataaataaagGCTCGTGAGGTTTCCGCGGGTGTTCAGCAGAGCTGTTCAGTCTCCCACGTCTGTGTCCCTATCGCCGATCAACCACAGCATATGGAAGCAAAGAGCCAGGAAGCCTGTGCCTAGCAAGTCGCCAAGGGCCGTTAGGTAGGGAATGGAAAAGTTATCGGGATCCATCCCTCTCTTCCACATCCACTGCACCATCCAGTCAGCCAGATACAGCAGGATCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367666 lncRNA upstream 107022 18631715 ~ 18631944 (+) True G310425
TU367662 lncRNA upstream 121965 18616690 ~ 18617001 (+) True G310421
TU367661 lncRNA upstream 123312 18613515 ~ 18615654 (+) True G310420
TU367657 lncRNA upstream 136386 18602378 ~ 18602580 (+) True G310416
XR_003403812.2 lncRNA upstream 137242 18596516 ~ 18601724 (+) True LOC113538055
TU367817 lncRNA downstream 91223 18900260 ~ 18906623 (+) True G310547
TU367819 lncRNA downstream 95792 18904829 ~ 18906623 (+) False G310547
XR_004580273.1 lncRNA downstream 105257 18914294 ~ 18964490 (+) True LOC117599928
XR_004580274.1 lncRNA downstream 105257 18914294 ~ 18959567 (+) False LOC117599928
TU367933 lncRNA downstream 251298 19060335 ~ 19066486 (+) True G310649
XM_026932794.2 mRNA upstream 46953 18687442 ~ 18692013 (+) False snrpe
XM_026932914.2 mRNA upstream 68507 18654169 ~ 18670459 (+) True kif17
XM_026932916.2 mRNA upstream 68507 18654169 ~ 18670459 (+) False kif17
XM_026932915.2 mRNA upstream 68507 18654169 ~ 18670459 (+) False kif17
XM_026932543.2 mRNA upstream 84927 18646711 ~ 18654039 (+) False sh2d5
XM_034314408.1 mRNA downstream 163925 18972962 ~ 19037668 (+) True cdk18
XM_034314409.1 mRNA downstream 170960 18979997 ~ 19037668 (+) False cdk18
XM_026932563.2 mRNA downstream 233545 19042582 ~ 19058802 (+) False mfsd4aa
XM_026932561.2 mRNA downstream 233548 19042585 ~ 19059543 (+) True mfsd4aa
XM_026932959.2 mRNA downstream 528895 19337932 ~ 19343063 (+) True c20h1orf50
TU367680 other upstream 46952 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 46952 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 1475303 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2237282 16489361 ~ 16501684 (+) False amigo3
XR_004580182.1 other upstream 2244827 16489361 ~ 16494139 (+) False amigo3
TU367971 other downstream 277988 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 699218 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 959953 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 959953 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 2061615 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile