RNA id: TU367933


Basic Information

Item Value
RNA id TU367933
length 3422
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id G310649
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19060335 ~ 19066486 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAACACTGacagcatttaaaaatcaagcatttattttaaacagagtGAGTGTAATAAGATTAGATCTTCTAGCAGACAATAGCGTTTTAATACAAGCTTGCTTTTGCATGCAGAAAGTCATAAAATGCACATCCCACTAGCTTCCTGGAAAAGCTTCCTCGTATTGTGCTGTGTAGCTGCGGGCGTGCTGGGCCAAGtccatgacctttgaccctgaaGAAGCAGTTGTAGCTCCTTGCACTGCCAGCGTATTATTAATATCCACTGTACTGCATTAAATAGCTGCTTATTTACATCTGTTTGGGCTTCCCAGGTGTCTAAGTTAACACAACAAACCTCAGACACGGCTGactgattttgttttctttaatatttgtcCTTTTATTCAACATCCACAATAGCTATTAAGCCGAATCGACAGTTGTAAACATTTACGCTGGTTGTCACAGATTGAAAAGACAATGGGACAAAACGTTAGCATTTGCACATTAGAATTTCTTACAGGCTGAACAACATTTACATGATATGTTTAGGACTGGTCACTTATCAAGGCAgtgttggaggaaaaaaaactttttttcactAAATTTTAACTTGTGCATCTTAGAGAAAGCATGATTGTGTGattgagttgacttttttttcccccgtccAAATTCTCAGAAAATTAAATgcttaagaaaaaataaattcatttataactTGAAGATGAATGGGCCACAAAATGAGTATAATTTTGGAAAAAGTAGTAAATATAAAGATTTCTTTAGCTGTGCAGTCAAAGATGTACGTGCATAGATTCATCTTTTGTAGTAGGGAAACTGGAGGTATGcagtttttctattttaatctGAACAGAATTGTTTAACatgatatatttaaatttaagtgcCCCAGAGAAAGTTAACACTGAAAAGttatacacaaaaatatattacagaagTATGGGAATGctacaaatttaaaataaaaaaaaaaaaagacccgaTTTTAgaaaagaatgtgcaggactaTCTAATCACTTAAAAGATACAgataatatttacacacaagcaGACAAACATAGAAAAGCTATACATAAAATgtcagcttcatttttttttttttttggcaaaatattTCAATTAACGTACTTTAATAGCTGTATAATAAACACGAAAGAacatagagggaaaaaaaactcccaGTAATATCCAATTTCATATCGCACACTAaatagatcagtgtgtgtgtgtgtgtgtgcaaaaataCACACCGTAATGAGGGGTGAAGCCTTTTAGGAATGCTCAAGTCTAATAATTAGATCTGGATTTAAACATTTGAAGCATACGGAGGAAATCAGAGGTTGCAGCTATTAAAGAAAACTCTCATTACACAGTATATCCACTTTCACTTGGTTGCTgctacttgaaaaaaaaaaaaaaaaacccttgaaaAAGCCACAAAAACTTACCCAAAATAATCAGCATGAAAAGCATCATTTCTAAGCATCATCTCTATCTCTAACTCTAACTTTCAGGTCCCTATGATCCTAAAATTCGTGTATGTTTGTAAAACACTCACAAATCACACGTTGAACCACATTAGCTTAAGTAGTTAGCGTATGTTACAGCTAGGTTCCTACTAGTTCTGTTTCATGTCCAAGTTTGTAAAGTCTGTAGCTCTGTAAAGCACCGACGGCCAGAAAACTGACCACTGAGAAAcgaaggggaaaaaaacgtgCACTCGTCACGTATGGCAgcgaaaaaaaacaaattcactAAGTCACCTTTTTCATACTTTTCACTTTTTAGCTTTTAagatattgtatttatatacaaaGCCCTTTAAAAGGTTTGGGGACACCTGGTTTTTGTTTGATAGATTTTCAATTGACGAGCATTTCCTTTGTTGGTTTACaacaaaattaacatttaaccttgttatttttttttttatatatttttataattgttaCAATTACTaaataacaaacattaaaataaaaaatatttagcagcTATAATTTGCATGCCATTTATttacctagaaaaaaaaataaattaagctacttatttaaaaaaaaaaaaaaaatctttacctTTCAATTGCGATGTATATTGTAGCTAAAACAATTctaaaactggaaaaaaaattgagtcacttgtttattttgcctctttttatccatcctttttgttttaattattattattttaatctcaCTGGCTTGGCTGTGTATTCATAATGCCCATGTTCTCGAACTATGCTTCGTTATAAAGTTAACCGCTGCACTTCGAGCTCCAGACATACTGCATAAGTGCTTGGTATTTGAAAGTATTTAACATACCTGAGACTCGGTCTGAGATGCTAAATAATTTCCATttcatattaatctttttttttttccttttcctgtcaCACATTTGACACTGAGCTTTAGGTTGATTTGCTCTTCAAGTGCTTTCGCTGCACGTGTGCACTGAGAGAATAACGACGTCAGGCGCCGTCACGCTGCGTGTGGCCGTGAATCCAGTTCTGCGTTTGAGTCATGGCTTGACGAGATCCTAATTACACACAATCATAGAGGCTGAAGACGAAGTTCCACCTGAAACCCGTAATGAAGGTCCTAAACACTCGTCATCTTCGGCAGCAGGAGGGAGAATTTGGTCAACGGGTAACACACGAGAGCGGTCCTGGTGTGTTGGTGCCATCCAGACTGTGTACCGGCACCGAGAACTGGGTGGAGCTCAGGACAGACGGAAACTGCGGAGAGAAGAGGCAAAGAATATAAAGGAAATGCCAGTCAAAACTGGCAACTTCAGGCTAAGTGAGAAGGTGGTTAAAGGAAGTAGtaataaaaaggaaagaaaaacatttaaatgtattcagtTTCTCCTGTGAACTGATCTGGCAAGACACAAAGTTaaagtagaagaagaagcagcaaaGTCAGTCACTAAAAATCTTTTGTGTTTCATATACGGCATACATCCACCCCACCCTCCACAAAacgttttaacattttaaatttggtcataatggaaaaaaaaaaaaacctaacttGTGTACTTACTTGCACACTTGGATACATATTTACAAACTTgcatacttatttacttacatacATAGTTGTGTACTTCCATACTTGCATACCTATTTATACACTCACTATCCACTTTTATCATGAacacttgctcatttatgccgttatctaatcagccaatcatgtggcagcagcacaatgcataatatcatgcagatacaggtcaagagcttcagttaatgttcacctcaaacatcagaatgaagtaaaagtgtgatctctgtgacttcagccatgccagatgagctggtttgcaTATTTCAGATACTATCCTgggatttttcacacacaactgtctctAGAGTCTACACAGAATGGTGTGAAAAGCATAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580273.1 lncRNA upstream 95845 18914294 ~ 18964490 (+) True LOC117599928
XR_004580274.1 lncRNA upstream 100768 18914294 ~ 18959567 (+) False LOC117599928
TU367817 lncRNA upstream 153712 18900260 ~ 18906623 (+) True G310547
TU367819 lncRNA upstream 153712 18904829 ~ 18906623 (+) False G310547
TU367692 lncRNA upstream 251298 18738966 ~ 18809037 (+) True G310446
TU367966 lncRNA downstream 15048 19081534 ~ 19082121 (+) True G310679
TU367970 lncRNA downstream 15883 19082369 ~ 19085507 (+) True G310680
TU367980 lncRNA downstream 23896 19090382 ~ 19122056 (+) True G310686
TU367999 lncRNA downstream 43643 19110129 ~ 19113027 (+) False G310703
TU368000 lncRNA downstream 43643 19110129 ~ 19113027 (+) True G310703
XM_026932561.2 mRNA upstream 792 19042585 ~ 19059543 (+) True mfsd4aa
XM_026932563.2 mRNA upstream 1533 19042582 ~ 19058802 (+) False mfsd4aa
XM_034314408.1 mRNA upstream 22667 18972962 ~ 19037668 (+) True cdk18
XM_034314409.1 mRNA upstream 22667 18979997 ~ 19037668 (+) False cdk18
XM_026932834.2 mRNA upstream 256433 18790926 ~ 18803902 (+) True si:ch211-112f3.4
XM_026932959.2 mRNA downstream 271446 19337932 ~ 19343063 (+) True c20h1orf50
XM_026932957.2 mRNA downstream 283262 19349748 ~ 19363983 (+) True cdc42
XM_026932958.2 mRNA downstream 283262 19349748 ~ 19361222 (+) False cdc42
XM_034313986.1 mRNA downstream 283479 19349965 ~ 19363983 (+) False cdc42
XM_026932871.2 mRNA downstream 428272 19494758 ~ 19498061 (+) False svbp
TU367680 other upstream 368321 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 368321 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 1796672 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2558651 16489361 ~ 16501684 (+) False amigo3
TU367971 other downstream 20539 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 441769 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 702504 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 702504 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 1804166 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile