RNA id: TU367970


Basic Information

Item Value
RNA id TU367970
length 3139
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G310680
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19082369 ~ 19085507 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgTTATATCGTCACACTGCCCAGCCCTTCTAATTAGGCACTTTAGGCACCATGTATTTCTGTTCTACAGTTAATACTAACGCTGTCTATGAGTCGTTTATCTACAGGCTTAACGTTTTTTTACCCTCCAAGTGCATCcgcctttaataaagcactcagtTAGAGTCACATTAGGATCTGAagttaatttcatttcatttattctgcATCATTTTATTTGGTCTGTGGCAATAACAGTGAACTAAAACATCCAGGTGTTCAAAAACATTCTGACTGACAGTGTCTTcaatgtttgttatttttaatttataccacagtgctgctgagttctggattctgattggtcagaaggtgttgattcattttctattacggcagctcggacagtagtgcagctgcaaatcacacgATTCatataaacggataaaacacAAATGTGTAGAATTGTTgattctgtgaggagacgtttatgtaacatttatggaaggagtctccagtgtcagcgctttgtaacagtcagaagtaaagctggaacacaggagtttacactttgcggtttctcggtaacatatagctactataacgtaagtgataacagaaattaacttgttttatggacgATCTACAACAATAaacagctgtggtataaaaggaataaaacacttcaggacgtacACCTATAACATCAcgaatgttgttttttttattccttacgttttttaactttttagctttgtctgccattttatttttgttcatttgaaaAGACATTCGCGTCAGAACGCAGTGATTTCCGGACTTACAGCTGACAGCCTTCCCAAGATTCCGCCCTAGGGGAAATAACGAGGGCAAGTTGACGAGGGTGTGTTAAATATagcactgaaactgaaaagtaACAATGTAAAGCACCCTCATTACGTGAGCAGCACTGCTCACTGTGACGTGTTATTCGACGTGCAGTCGTATAAGAGCTGGAGTTAGTAATTAACCAGTGACGCATCTTTGTATTCATGACTTCTCTCAACAACAAGAAGAAAGAATTTAATTAAGCTTAACACCAGGTGttacaaaaaaaggcaaaggcAATAGTGAGCTTTATAAGCTACTGATCAGCTCTCTTTCAAAGAACAAAACCTAAAGGacggagtttaaaaaaaaaacaaaaaaaaaaaacttcactgaTTTATGATTTACAATCATAACAAGATAGCTTCATTAATATTGAAAGGTGAGAATAGGAAACATTCATCTGCCCCTGATGAAACGAAACACAATACAGCTCTGCTCTTAAATGTAGCTTATAAACCTCAAGTTTTTAGTTACTGTCCCTAGcagggatgcatcgataccaTTTTTTTCAAAACGATAATGTTACCGATACGGATACTGATACTACACATACGGAACATTTACTTTAGCTCCGTTTATGTTTCCCTGGTTTAAATAGCGATTGTGAAAAGCGCACACGTGCGTGTTCATGCATTTAGGCTACCGAGCTCTTTCTTTATAACGTTAGCtatgtaattttaaatgaagtgcattagctagctactatTAGTTAGCTTGTATCTAGAAGGGTTGCAGTGGAGAAGAGCGGGATTTGAGTCACTTCGGAAAAAGCGCTTTTGTACAGCTGTActtaaagtacatttttattttcattgcgTTTCATTGCATATTCTCTTGGCGTCAATGACTGATAGCGGCtgatcatcaagaacaacatactagGTAAGATctattattttcactcacctagctTTGTCTGTAAGCATGATTTTTGCCCAGCTAGCATTTACTATTTctatttaagatgtttttaagATGTTTAGCCACAGTTTGCTTTGAATGCCATCATTAACAGTGAAATACGTCCAGATCATTTCCCGTCATCTGTCCATTAACTCGACAACGTACGTTATTCTTACGTCACACAGTATCACCTGGTatcagagggttttttttccagttagaGTAAATAAGCACAGTATCAGACTGATACCtgataccagtatcagtatcgatgcatccctCTTCCCTAGCTTATCTGTGTTTTTACAGTACGTGAGCGGTAATTCCTTAAACGTAGTGAATGTCGTACGCTGAAAGTGAAAGTCCGACTGATGACCGGGATCTCTGGTTTGGCATTAGCCTCTCTCAATAGTCTGAAAGAGATGCGAGGCACAGGATAGATGCACTTTAACATGATTTGGTTCAATCAGGGATGTGATTGGGCCGTAAAAGAGGACAGGTAGCGTTTTTGcaaaagatgaaagaaaaaagggaaataaagTCAGTAACATCAGGCGTTAGTACAAAAAAGGTAAGAAAGTAAGATACAtcaaggtaaaaaaaacaatcacactGGACCTTGCATTGATTTTCAGAGGCAGGGAATTTTAAAACCTTACCTTAAGTGCTATACATTAGATACTATTCCGTGATAGTATGACGATAGGCATTATCCAATCCAAGCTGACAATGCAGTGCATACTTACGAAAAATCGGGATTATCTTCGGTTCTCGGTTTTAGCATACATAGCATACacgagactttttttttttttcacctttacaAGCAGGTATACATGAAGCTTAGGAAAGACACTGTTTTAAATGTAAGGCAGTCTGGAGCCATGCTCACGTTTGGACTTCAAAGTTCGTACGAAGTCTTTCCGATTCAGATTACTAGGGAATATTCACAAAATGCACCAGTTTAGCACCGTGCTCATCCTCACGCTGGATTTTTGCATGGAAATCTCTCCCAAATCTGATTTACACCAAGAGTGTACAAGGGTAGTGAGTAGTGTGCAGCGTGTAGCGGCGCAAATCTGCTTCGGGGCTGAACAATCACATCCCTGAGGTTCAAGTTAGCCAACGTTAGCACCGAGAAAAGCACAGATCTGGAGAAAACCAAGcaaaaggaggaagaaaagtGAAATAAAGGAAGATCTAGCTTTTCCAGGTTTAGTGGAGGGATCGTGCTGCTTCAGACGCTCGGTCTGGCCAGTCTGCTCGCGCGCGGGCTCCTGTGCACCTTGGTGTGTTTGGACAGGTGGTCGCTCCTGGCGAACTTCTTATCACACATCGTGCATTTGTAAGGCTTCACTCCCGAGTGCGAGCGACGGTGACGGGATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367966 lncRNA upstream 248 19081534 ~ 19082121 (+) True G310679
TU367933 lncRNA upstream 15883 19060335 ~ 19066486 (+) True G310649
XR_004580273.1 lncRNA upstream 117879 18914294 ~ 18964490 (+) True LOC117599928
XR_004580274.1 lncRNA upstream 122802 18914294 ~ 18959567 (+) False LOC117599928
TU367817 lncRNA upstream 175746 18900260 ~ 18906623 (+) True G310547
TU367980 lncRNA downstream 4875 19090382 ~ 19122056 (+) True G310686
TU367999 lncRNA downstream 24622 19110129 ~ 19113027 (+) False G310703
TU368000 lncRNA downstream 24622 19110129 ~ 19113027 (+) True G310703
TU368001 lncRNA downstream 24622 19110129 ~ 19113027 (+) False G310703
TU368005 lncRNA downstream 24622 19110129 ~ 19113027 (+) False G310703
XM_026932561.2 mRNA upstream 22826 19042585 ~ 19059543 (+) True mfsd4aa
XM_026932563.2 mRNA upstream 23567 19042582 ~ 19058802 (+) False mfsd4aa
XM_034314408.1 mRNA upstream 44701 18972962 ~ 19037668 (+) True cdk18
XM_034314409.1 mRNA upstream 44701 18979997 ~ 19037668 (+) False cdk18
XM_026932834.2 mRNA upstream 278467 18790926 ~ 18803902 (+) True si:ch211-112f3.4
XM_026932959.2 mRNA downstream 252425 19337932 ~ 19343063 (+) True c20h1orf50
XM_026932957.2 mRNA downstream 264241 19349748 ~ 19363983 (+) True cdc42
XM_026932958.2 mRNA downstream 264241 19349748 ~ 19361222 (+) False cdc42
XM_034313986.1 mRNA downstream 264458 19349965 ~ 19363983 (+) False cdc42
XM_026932871.2 mRNA downstream 409251 19494758 ~ 19498061 (+) False svbp
TU367680 other upstream 390355 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 390355 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 1818706 17260979 ~ 17263663 (+) True LOC113537865
XR_004580181.1 other upstream 2580685 16489361 ~ 16501684 (+) False amigo3
TU367971 other downstream 1518 19087025 ~ 19087806 (+) True G310681
TU368136 other downstream 422748 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 683483 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 683483 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 1785145 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile