RNA id: TU368000


Basic Information

Item Value
RNA id TU368000
length 2879
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G310703
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19110129 ~ 19113027 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacagaaaataaaaaaaagcatcattttTTGGGGGGTGGGATTTGAGGGTTGAAAAACAATGAGACAACACACTTGTTGGGAAACCGGAAGAGTTAAAGGGTTAGGGTACGGTACATTACGGTACAGGGAGATACGCAGTGATGCCTGGCACAAAAATGACAGAACCGTGTTGTTAGGTTGCTATTAAGCCTCATGAGGAGTTCATGCACATGAACAGACTGTACAGATGAAGTAATGATCATAGTCCATCATGTTAAAGCACTGAAGCTGGAACGGGAACAGAGGCGGAGAGTGAACAGGACGTTACAAACTCCTCGATCTGGTTTAGATAAATTCACCTTCACTTCAACGCTGCGAGGAAAAACAAGTTCCTCGACTTTCCAGCGCTTACGGCTATGAAAGAAACTCCTCAGTGCAGGCTGCAAGAAGTCAGATCTCGGTTTAAAACGTTAATAATGCAGCAAATAAAGCAGGTTCTTGCTGCTGGAGTCCAATGAGAAATATTTTCCAGAGCGTtaaagcatttacatttacatctctGGCTAAAAGCAGAGTGTGTAAAAAGCGTGCAAGGGCTCAAATCAACaccaaaaagaagaagaagaagaagaagaaggaggaaaaaaccTTCTTTTAAAACATCCTATACcgttacatctctctctcacacacacacacacacacacacacacacacacacacacaaactggaACACTCACGCAATGTACGTTAAAACCGCAGAGACGATTTCGATATGAGATGAAGTAGTGGATGAAATGAAAACTACAAATTaaagcacaaaaaacaaacatacaaacaaaaggAAGCTCTCAAAACAAAGTTACGTGGATTAACACAAATGTGTGCTGGATGCTGTGTGACGCTGTTTTACCGCCTTCATTCGCTCGAAATGagaaatttttcattattttaggaAAAGGAACCAATTaagctagttaaaaaaaaaaattagtcacATGCATGGCTCTGGTTTTAAATGACTAACGTTCATATTTTAGGAGATGAAAACAAAAGGGGGAGTCACTTGCACATCTCTGGTTTAAAAGACTAATTTTAGAAGTTCAATACAAAATAttgaaggattaaaaaaaaaaaaaaaaaaaaaaaaaaacaggacgcTGACTTTATTGTTGGAAATTctgtcaaaaatgaaaaacattagcGTAATGAAAGCTGAGTTCCTAGCAGTCACAGCAATCGGGggaaagaaaatttaaaactaaaaagtcGGGAAAGGGGCGTTTCCTAAATCCTGGCTCTGTTATAACCTTCTACTACATATCTTCGTGTTTTCCTGCTCAAACACTCCACCACCCtaacttttattgtttttaatgtactttataaataaaattcacttTTTACACACACCACGGAAGGTGAGTCGGATCAGACCGACCACTCGACATGTAAAAGGCTCAGATTGGTTCTAAAGCAGTGTTTAGACATTACTCAcagtttaaatgatttttaaaaagcccTGAAACAATTTgttggttgattttttttttcttattaaactgGACTGTTCTTGATATTACACTATTAGACTGTACAGACAGGCGGGATTAGTAGTTATGACTCACGCAGCATAgctattacttatttattcactaCATAATCAAttggaaaagattttaaaacCGTAATTTGTTGTAACGTGCGATTCCTGTGATCTGGCAACCCAGTAACCCTGCTAGTCAGAAAATATTAGCTGGCTGTTTGCGTGCTAAGTTACGATTACGACTCGCTGCAGCATTTGGGagtgtttactgtaaaactctgtatatacacacacacacgccaatcTCATCACCATGTTTTGAAACACCTTCTAATTATAATtagcattaaaattatttgacaGCTCACTGAAGGCTGATTTACTTTTCAGCTGAAATGGTCAAAACGGCAATGGCATCTTTACTAAACATATTTACTTGCTGTTGAATATATAACTgtctaaactcacacactgatagattttatttcacattaacgCACTTGAAACATTCTCCATTTGCCGTGACAGAAACCATCAGCGCATCTTTCAAGCGAGAAAATCAAGCACCAGCTGAAAGCTCACTAATATGAGCTGTggagaagggggcggggcttccacgAGGCGAAAGTTACGCAACTGTCAATCCAGATtcataaaatgataaaatgtgtaACTGTTTGTCGGTGTGTGTTTCTACCGCTTGAAGGAGCTGGAAAAAGTCAAGGcaagtgtgttagagcaggaaaaacaccagGACCAACGCCGGGAAACACCAGGAAGTATGTGGAGATGATACCAGAACTCAAGAAGAACCGTTAGAGCAGCAGCCCATTAGCAGTGGAGGAGCGTCGGGCTTTCCTTATAGTTCTtacctataaataaaaaaacaaatccatcacacacagacacatacacacacacctctcactctcgctcacacacacgcacatacgcGGACTGATGCATCCCGGGACAATGCGGTTTTATGATACAGAAACTGTAGGTTTTAAAAAAGCCAGGTCaccacagagaaataaaaaaaaaaaacctcaaaaggagaaaaaaaaacagacagaaaaagaaaggagagagagcgaACGAGTAGCAAGGTGGCTAATCTTCCCCAGATGGCGCGTCTTCTTCTGAACcgtcctcctcttcctcgtcttcctcatcatcaggggtgttcttcttctttttggcAGACGGCAGCGGCGAGCTCTTCTTCTCcacctcatcctcctcctcgtcctctgGTGGGCTCTCgggctcctcctcctctttagGCGAGGACTTCTCCAGGGCCTTCGCTGCACTCGGGCGACCTTTGCCCTTTCCCTTCATGGGGCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367970 lncRNA upstream 24622 19082369 ~ 19085507 (+) True G310680
TU367966 lncRNA upstream 28008 19081534 ~ 19082121 (+) True G310679
TU367933 lncRNA upstream 43643 19060335 ~ 19066486 (+) True G310649
XR_004580273.1 lncRNA upstream 145639 18914294 ~ 18964490 (+) True LOC117599928
TU368130 lncRNA downstream 381823 19494850 ~ 19498671 (+) False svbp
TU368131 lncRNA downstream 381823 19494850 ~ 19498671 (+) True svbp
TU368163 lncRNA downstream 448156 19561183 ~ 19561390 (+) True G310828
TU368205 lncRNA downstream 604054 19717081 ~ 19717329 (+) True G310870
TU368221 lncRNA downstream 698411 19811438 ~ 19811735 (+) True G310882
XM_026932561.2 mRNA upstream 50586 19042585 ~ 19059543 (+) True mfsd4aa
XM_026932563.2 mRNA upstream 51327 19042582 ~ 19058802 (+) False mfsd4aa
XM_034314408.1 mRNA upstream 72461 18972962 ~ 19037668 (+) True cdk18
XM_034314409.1 mRNA upstream 72461 18979997 ~ 19037668 (+) False cdk18
XM_026932834.2 mRNA upstream 306227 18790926 ~ 18803902 (+) True si:ch211-112f3.4
XM_026932959.2 mRNA downstream 224905 19337932 ~ 19343063 (+) True c20h1orf50
XM_026932957.2 mRNA downstream 236721 19349748 ~ 19363983 (+) True cdc42
XM_026932958.2 mRNA downstream 236721 19349748 ~ 19361222 (+) False cdc42
XM_034313986.1 mRNA downstream 236938 19349965 ~ 19363983 (+) False cdc42
XM_026932871.2 mRNA downstream 381731 19494758 ~ 19498061 (+) False svbp
TU367971 other upstream 22323 19087025 ~ 19087806 (+) True G310681
TU367680 other upstream 418115 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 418115 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 1846466 17260979 ~ 17263663 (+) True LOC113537865
XR_004580182.1 other upstream 2615990 16489361 ~ 16494139 (+) False amigo3
TU368136 other downstream 395228 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 655963 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 655963 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 1757625 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile