RNA id: TU368130


Basic Information

Item Value
RNA id TU368130
length 1378
lncRNA type sense_over
GC content 0.41
exon number 3
gene id svbp
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19494758 ~ 19498671 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACcaacgaagaaaaaaaaacaggaagttagCAAACGGtgctacttttttatttgtttagttgttattattaatttattattgtaaacTGCGCTTCatagtatttatattttgAAATTCCTAATCCCAGGCATTGAGAGAATGGACGCTGCCAGCCGGAAAGACAAACCCAAACAGAAGGAGACGTCTGTACGAGGGGACAGAGCGAAACAGAAGTCTGCTCAGCAGGAGCTCAAGCAGAAACAGAGAGCAGAGATCTATGCCCTGAACAAAGTCATGACGGAGCTCGAACAGCAGCAGTTTGAGGCGTTTTGCAAGCAGATGCAGTCGCAACCAGAATGAAGACGTGTATAAAAGCAAAACCGACTGATGAACTGCAACCCTACAGCATCTTCCACACCACACTCCTCATGTGCAGAGTCTTATATTCAGTTATTCAAACAGCCATTCATGGGGCAGCAgtacagtgcataaaatcatgcagctacacatcaagagcttcagttaatgatcatatcaaacatcagaatgatgttctgatgttgtaaagagtgattatataaGTTAcagtagacttcctgtcagctcaaaccggtctggtcattctcctctgatctcgcTCATAAACCAGGTGTTTCAGCCCGGAGATTCCTACgcacactggatgttttttgttttttgcaccattctctgtaatctctagagactgttgagtgtgaaaatccgaggagatcagcagtttctgaaatactcaaaccagcccatctggcaccaacatccatgccacggttaaagtcacagaggtcatacttttttattctgatgtttgatgtgaacataaactgaagctcttaacctgtatctgtatgattttatgcactgtgctgctgccacatgattggctagtttGGATAGTTGcctaaatgagcaggtgtacaggtgttcctattaaagtggacagtgagtgtatgctGCATGAGGGCAGTGCGTTCAGTCGATGATCATTACATTAGCAGTATTTATACTAATGTTATGGGTCAGTCCCAAAGCGAAAAGGTATCAATTGATTCCGCACTGAATCTCTGTTTAGTGTGAGAAGTGATAGAAGCGACATGGAGGAAATGCAGAATGTTAAATATTGGTGCTACTTTTCAACCTGTTACATgtcttagttttttttaagtacagtTATTTCCAGTGTTGATTTGTTGTATTAAAGGTTTTCGTCAGTTTACAGAGACTGCATGGAAGACAGCATGGACAAGGTTCTGGCTGTGCCATGGCTCTCACTTGTGTTTCATTCGTGTGTCACAGAGTTTTGACGTTTCACCGATTACCACTGatcttatttaataaatacatttttttaacaagaagTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU367980 lncRNA upstream 372794 19090382 ~ 19122056 (+) True G310686
TU367999 lncRNA upstream 381823 19110129 ~ 19113027 (+) False G310703
TU368000 lncRNA upstream 381823 19110129 ~ 19113027 (+) True G310703
TU368001 lncRNA upstream 381823 19110129 ~ 19113027 (+) False G310703
TU368005 lncRNA upstream 381823 19110129 ~ 19113027 (+) False G310703
TU368163 lncRNA downstream 62512 19561183 ~ 19561390 (+) True G310828
TU368205 lncRNA downstream 218410 19717081 ~ 19717329 (+) True G310870
TU368221 lncRNA downstream 312767 19811438 ~ 19811735 (+) True G310882
TU368219 lncRNA downstream 337008 19835679 ~ 19836564 (+) True G310880
XR_004580176.1 lncRNA downstream 340750 19839421 ~ 19848284 (+) True LOC117599874
XM_026932957.2 mRNA upstream 130867 19349748 ~ 19363983 (+) True cdc42
XM_034313986.1 mRNA upstream 130867 19349965 ~ 19363983 (+) False cdc42
XM_026932958.2 mRNA upstream 133628 19349748 ~ 19361222 (+) False cdc42
XM_026932959.2 mRNA upstream 151787 19337932 ~ 19343063 (+) True c20h1orf50
XM_026932561.2 mRNA upstream 435307 19042585 ~ 19059543 (+) True mfsd4aa
XM_026932701.2 mRNA downstream 9518 19508189 ~ 19517178 (+) True phf13
XM_034314136.1 mRNA downstream 36740 19535411 ~ 19762252 (+) False LOC113538092
XM_034314130.1 mRNA downstream 36747 19535418 ~ 19762252 (+) False LOC113538092
XM_034314131.1 mRNA downstream 36747 19535418 ~ 19762252 (+) False LOC113538092
XM_034314132.1 mRNA downstream 36747 19535418 ~ 19762252 (+) False LOC113538092
TU367971 other upstream 407044 19087025 ~ 19087806 (+) True G310681
TU367680 other upstream 802836 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 802836 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 2231187 17260979 ~ 17263663 (+) True LOC113537865
XR_004580182.1 other upstream 3000711 16489361 ~ 16494139 (+) False amigo3
TU368136 other downstream 9584 19508255 ~ 19517159 (+) False phf13
TU368156 other downstream 270319 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 270319 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 1371981 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile