RNA id: XM_026932701.2


Basic Information

Item Value
RNA id XM_026932701.2
length 1387
RNA type mRNA
GC content 0.55
exon number 6
gene id phf13
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19508189 ~ 19517178 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAAGACGCAGCCTGGCCGCTGTGCTCGGGGGAGGTTTTCTAGCTTTTTTGAAGCTTTGCGCTTGTTTTAGTGCCACTTCACTGTCACATCAGATCTGTTACCTGTAAATTCACGTAAATTTGGGGATTTACACCCTTCGTGCTGTCGATTCCGATCCCTGTCATCGCTTGGGTCGTCGATCTGAGTGACTCGAATTCTGCCTCGAAATTTCCACTTATTTTCACTCCACTTCATAGAAATGGACAACTCCGACGTTAAAACATCCGCGTTTGACTCACAGGGTTACAGTCCAACGTACAAAAGGAAAAGGACAGTAGAAGATTTCAACAAGTTTTGCACATTCGTCTTGGCCTATGCAGGTTATATTCCATATCCACAGGAGGAGGCGCCGCTCAGGAGCAGCTCGAGTCCTCCCAACAGCACGGGTAGCACAGCCGACAGCGATGGCCTTCCCTCTCCCGATCAGCCTCCGCACAAAAGCCGCAAGAGCTTCAGCGGCTTCAAGAGGCCCGCGAACGACGAGCCAGAGCTCCACAAGCGGCCCAAATCGACGGGCTTCCTCCTCGAAGGACGCAAGAAAACCgataaaatgaagaagaagaaaaagaagcagatGGAGAACAGCAAGTCCGACGATTCTGGATCTTTCCCGCCATTTCCCTCCGGCACCAGAGCGGAGATTTCTGCTTTCGGTTGCACCGTCAAGGAGGAACCGGAGGATTACATCAGCATCTCTACGCCGCCTTCGTACGCCGAGCGCTCCGCTCACCCCGGCACCAGCTCTCCGCTCAGTTCAGGCTCTCACAGCACCGTAGGCTGTAAAAAGGAACCGGAGGCCGAGCGGGCGTGCTGGGATTCCTCGGCCAGCTCGGGAACGGAGTCCAGAGGCGCGAGCAGGGAGAGGCTGGCGCTGCCTGAGGGAGAAGCCGTGGTCTTGAAGATGGAGGGATTCCCCGGCACTAGAACGGTGATACGCCAGGGAAAGCAGGTGGTGTTCCGCGACGAAGACGGATCCGCCGACGACGAGGACATCATGGTCGATTCAGACGACGATTCGTGGGACCTGGTGACGTGTTTCTGTATGAAGCCCTTCGCCGGCAGGGCGATGATCGAATGCAACCAGTGCAACACCTGGATTCACCTGTCCTGCGCCAAAATCCGCAAGTCCAACGTTCAGACGTACACCTGCCAGCGGTGCAAAGACTCCAAATTTGACATTCGGCGCTCGAACCGCTCGCGCATGGGCTCTCGAAAGCACCTTCTGGACTGACGTCGCTCGCGCCCCTCCCCCGAGTACGAACTCTGATCGAGACAGGAGACGAGTACAGAAGAGGAAGGGCTCTGACTGCGttatcaaactttttttttttttttttttatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368130 lncRNA upstream 9518 19494850 ~ 19498671 (+) False svbp
TU368131 lncRNA upstream 9518 19494850 ~ 19498671 (+) True svbp
TU367980 lncRNA upstream 386133 19090382 ~ 19122056 (+) True G310686
TU367999 lncRNA upstream 395162 19110129 ~ 19113027 (+) False G310703
TU368000 lncRNA upstream 395162 19110129 ~ 19113027 (+) True G310703
TU368163 lncRNA downstream 44005 19561183 ~ 19561390 (+) True G310828
TU368205 lncRNA downstream 199903 19717081 ~ 19717329 (+) True G310870
TU368221 lncRNA downstream 294260 19811438 ~ 19811735 (+) True G310882
TU368219 lncRNA downstream 318501 19835679 ~ 19836564 (+) True G310880
XR_004580176.1 lncRNA downstream 322243 19839421 ~ 19848284 (+) True LOC117599874
XM_026932871.2 mRNA upstream 10128 19494758 ~ 19498061 (+) False svbp
XM_026932869.2 mRNA upstream 10128 19494907 ~ 19498061 (+) False svbp
XM_026932870.2 mRNA upstream 10128 19494908 ~ 19498061 (+) False svbp
XM_026932872.2 mRNA upstream 10128 19495002 ~ 19498061 (+) False svbp
XM_034314372.1 mRNA upstream 10128 19495077 ~ 19498061 (+) False svbp
XM_034314136.1 mRNA downstream 18233 19535411 ~ 19762252 (+) False LOC113538092
XM_034314130.1 mRNA downstream 18240 19535418 ~ 19762252 (+) False LOC113538092
XM_034314131.1 mRNA downstream 18240 19535418 ~ 19762252 (+) False LOC113538092
XM_034314132.1 mRNA downstream 18240 19535418 ~ 19762252 (+) False LOC113538092
XM_034314133.1 mRNA downstream 18240 19535418 ~ 19762252 (+) False LOC113538092
TU367971 other upstream 420383 19087025 ~ 19087806 (+) True G310681
TU367680 other upstream 816175 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 816175 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 2244526 17260979 ~ 17263663 (+) True LOC113537865
XR_004580182.1 other upstream 3014050 16489361 ~ 16494139 (+) False amigo3
TU368156 other downstream 251812 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 251812 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 1353474 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile