RNA id: TU368157


Basic Information

Item Value
RNA id TU368157
length 2248
RNA type TUCP
GC content 0.39
exon number 6
gene id vamp3
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19768983 ~ 19783925 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttctggtatTTCCCTGAAGTGCACCAGCCCTTTAACCACAGCTCCTGCTTCAGTCGCCTCACACAACTGCTAACACACCgctgtttttcttcatcacttttaCTGCTCCGTGTTTCGGTCTACAGGAATCATGTCTGCTCCCGCTGCAGAAGGTCCCGGCGCTTCAGGCGTGGCAGGAAACAACCGAAGACTGCAGCAGACCCAGGCTCAGGTGGATGAGGTGGTGGACATCATGCGGGTGAATGTGGACAAAGTCCTGGAGCGAGACCAGAAGCTGTCCGAGCTGGACGACCGGGCGGACGCTCTCCAGGCCGGAGCCTCGCAGTTCGAGACCAACGCCGCCAAACTGAAGAGGAAGTACTGGTGGAAGAACTGCAAGATGTGGGCCATTTTGATAGCTGTGCTCATaatcatcgtcgtcatcattATCATTTGGAGTAAATCTTAAAACAGCAAGAAAACGGCAGAATGGCCTGACGGCTGTGATGGGAGAgtggataaatatatataggaagtatcagctgatactaTGAAGACGGAGAGAGCACGTTCTTCCTGACGTAAAGCTGTTCTAGCCTGCTGAGTGTCacattttgtaaaaagaaaaaaatccttaactcttgtttattgtttttttcctttttttattttttgtttttaatagttGTGATTTGAATGTGCAAAGACTTACTCATCTGacgtttgtttttttcctcgcTTATTAAAATTTCACGTGCACTCCATACTTTCACTATTTGTACTTATCACAATGGCCTTAAGCAGTCAGTGGTTCAGAAGAGAGCAAAAAGAGTGCcagtttgtcatgttaaaaCTTTTAGCTCCTTCATGTGCCTCTTAAACTTTTTTAGGTAAAAAGGCGGCACTGAGAACCAGTGGAGCCAGAACGTTGTAAAcaagcctgaaatgaagaaactagtTTTTTACTAGAAACaatgtaaaaattacaaactgcaccttcttgacttcttttttttgatCATCAAGGTCACATGATAGTGTACATCTGTCTAGCTGTTTGTAGCATTGATGTTGAACTATCCTGACcaaaaagttgaacttttttgCTTACCGATCAACAGAGAGCTCCATGTCTCTAAAACATGATATAAAATGGTtggactgtttttttgtttttttttaattagtcgGTGCCTTAACATTTTAGTGCCAGCACAATTTAGAAGTATCCAGTGACTCGAAGGCCTTCGAACAAACACACTTGAGTGCCATTAATCAACACTGCCTGCATGATTCAaatcaaattatatatataattataattataattatacTTTCTATGTACTTGCACAGTTGTTTTCTTCCAGACCGTTGAGCTACTGCTATTTTATGATCTCACCCAAAATGAtgatgaatttaaataaaattcttgctacactttctctttttttctttctaattttttctttcttcactaaGCAGCAGCAGTCTCCGAGCATTCACGTCATGTTTGATGGCACCAGAACAAGtttgtttatgagtgtgtgattgatttatatatacagtactgtgcaaaagactTGGACCATCTGAGAAGCCGTTTAtctgcagtgtttgtttttaaaacaggatttttgcatttcagaaaaaaaaaaaaaaagagtcagcTGGAAGAACCCGGGGTTTGTTTCCCAAACCATCtaattgtgtgtatttattaaaattccACCAGCAGCACAGCTAATACACTGATTAGCTAAAGCAGGTGTGCTAGCAGGGGTAATTTAGCAAATACGCCAGTGTACCAGGGATAGTTAGAGATACTGGAATGTTTTATCAATGAGGCTGATTCTCTGAAACATGGATCTTGTATGTTTGGGAAAACTCCTGAGCCCAGCTTTAAGCTATAAAGCTCCTAAAGCTCTGATTTAGACCTACTCGGGCTGTTATGTCATAGCTGCGTGGGAACGCCTGGACATGGAAAAGCACTCTTCATGAAGCTCGGAAAAAATTTATAACACTACTTCATGTGTGGGTTCTAATAAAGGCTacgtaaaaacatttaaaaaaaagaaactgaagaaaGTAAATTCTATTATTAGTGTTTCTATTTATATGATGCAAGATATATAGTTTTACATATTTcagtctaagacttttgcacattaCTGCTTTTTGAATGTAAACtattatatttcaaataattctATAAAATGGCCTTCCAACCTGTTGTGCTTTTTGAATTTGCTATTGCTAATAAATATGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368205 lncRNA upstream 51661 19717081 ~ 19717329 (+) True G310870
TU368163 lncRNA upstream 207600 19561183 ~ 19561390 (+) True G310828
TU368130 lncRNA upstream 270319 19494850 ~ 19498671 (+) False svbp
TU368131 lncRNA upstream 270319 19494850 ~ 19498671 (+) True svbp
TU368005 lncRNA upstream 655963 19110129 ~ 19113027 (+) False G310703
TU368221 lncRNA downstream 27525 19811438 ~ 19811735 (+) True G310882
TU368219 lncRNA downstream 51766 19835679 ~ 19836564 (+) True G310880
XR_004580176.1 lncRNA downstream 55508 19839421 ~ 19848284 (+) True LOC117599874
XR_004580177.1 lncRNA downstream 55508 19839421 ~ 19845547 (+) False LOC117599874
TU368220 lncRNA downstream 64554 19848467 ~ 19855283 (+) False si:dkey-264d12.5
XM_034314134.1 mRNA upstream 6738 19535418 ~ 19762252 (+) False LOC113538092
XM_034314142.1 mRNA downstream 3908 19787821 ~ 19807212 (+) False per3
XM_034314141.1 mRNA downstream 3909 19787822 ~ 19809321 (+) True per3
XM_034314140.1 mRNA downstream 3909 19787822 ~ 19809321 (+) False per3
XM_026933004.2 mRNA downstream 31993 19815906 ~ 19834429 (+) True si:dkey-264d12.1
XM_026932462.2 mRNA downstream 69535 19853448 ~ 19868481 (+) False si:dkey-264d12.5
TU368136 other upstream 251831 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 681184 19087025 ~ 19087806 (+) True G310681
TU367680 other upstream 1076976 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 1076976 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 2505327 17260979 ~ 17263663 (+) True LOC113537865
XR_004580241.1 other downstream 1086739 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007109 True 3633 mRNA 0.41 5 NC_007122.7 39935154 ~ 39956925 (+)
grasscarp (Ctenopharyngodon idella) TU501504 True 1704 TUCP 0.40 5 CI01000306 11082988 ~ 11098376 (+)
rainbow trout (Oncorhynchus mykiss) TU713291 True 1987 TUCP 0.43 5 NC_048571.1 56853817 ~ 56869451 (-)
striped catfish (Pangasianodon hypophthalmus) TU254170 True 2765 TUCP 0.33 3 NC_047607.1 21014439 ~ 21027259 (-)
bowfin (Amia calva) AMCG00002094 False 1793 mRNA 0.49 6 CM030136.1 3113477 ~ 3128440 (-)
mexican tetra (Astyanax mexicanus) TU254170 False 1640 lncRNA 0.41 5 NC_035918.1 4974232 ~ 4989258 (-)