RNA id: TU368163


Basic Information

Item Value
RNA id TU368163
length 208
lncRNA type intronic
GC content 0.42
exon number 1
gene id G310828
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19561183 ~ 19561390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTAATGGGTTAAAGCACAGTATAGTCAtccttgcagccagcactgtAGTAAATCTTAAAGATACAGTCCATAGTAAAGTGTGCTGTGATTGGCAGCGGTTGAATCCAATTAATTATTATCCTCGCCTCCATCATTCTGCCCACTGGCCTTTTGGAGAGTGCACAAATGCAGTGATGCCCTTTggacaaaaataacaacacCACAGA

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368130 lncRNA upstream 62512 19494850 ~ 19498671 (+) False svbp
TU368131 lncRNA upstream 62512 19494850 ~ 19498671 (+) True svbp
TU367980 lncRNA upstream 439127 19090382 ~ 19122056 (+) True G310686
TU367999 lncRNA upstream 448156 19110129 ~ 19113027 (+) False G310703
TU368000 lncRNA upstream 448156 19110129 ~ 19113027 (+) True G310703
TU368205 lncRNA downstream 155691 19717081 ~ 19717329 (+) True G310870
TU368221 lncRNA downstream 250048 19811438 ~ 19811735 (+) True G310882
TU368219 lncRNA downstream 274289 19835679 ~ 19836564 (+) True G310880
XR_004580176.1 lncRNA downstream 278031 19839421 ~ 19848284 (+) True LOC117599874
XR_004580177.1 lncRNA downstream 278031 19839421 ~ 19845547 (+) False LOC117599874
XM_026932701.2 mRNA upstream 44005 19508189 ~ 19517178 (+) True phf13
XM_026932871.2 mRNA upstream 63122 19494758 ~ 19498061 (+) False svbp
XM_026932869.2 mRNA upstream 63122 19494907 ~ 19498061 (+) False svbp
XM_026932870.2 mRNA upstream 63122 19494908 ~ 19498061 (+) False svbp
XM_026932872.2 mRNA upstream 63122 19495002 ~ 19498061 (+) False svbp
XM_026932940.2 mRNA downstream 207593 19768983 ~ 19783925 (+) True vamp3
XM_034314142.1 mRNA downstream 226431 19787821 ~ 19807212 (+) False per3
XM_034314141.1 mRNA downstream 226432 19787822 ~ 19809321 (+) True per3
XM_034314140.1 mRNA downstream 226432 19787822 ~ 19809321 (+) False per3
XM_026933004.2 mRNA downstream 254516 19815906 ~ 19834429 (+) True si:dkey-264d12.1
TU368136 other upstream 44024 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 473377 19087025 ~ 19087806 (+) True G310681
TU367680 other upstream 869169 18687397 ~ 18692014 (+) True snrpe
TU367679 other upstream 869169 18687453 ~ 18692014 (+) False snrpe
TU366607 other upstream 2297520 17260979 ~ 17263663 (+) True LOC113537865
TU368156 other downstream 207600 19768990 ~ 19783913 (+) False vamp3
TU368157 other downstream 207600 19768990 ~ 19783913 (+) False vamp3
XR_004580241.1 other downstream 1309262 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile