Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU368220 |
| length | 802 |
| lncRNA type | sense_over |
| GC content | 0.54 |
| exon number | 3 |
| gene id | si:dkey-264d12.5 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 19848467 ~ 19868481 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004580176.1 | lncRNA | upstream | 183 | 19839421 ~ 19848284 (+) | True | LOC117599874 |
| XR_004580177.1 | lncRNA | upstream | 2920 | 19839421 ~ 19845547 (+) | False | LOC117599874 |
| TU368219 | lncRNA | upstream | 11903 | 19835679 ~ 19836564 (+) | True | G310880 |
| TU368221 | lncRNA | upstream | 36732 | 19811438 ~ 19811735 (+) | True | G310882 |
| TU368205 | lncRNA | upstream | 131138 | 19717081 ~ 19717329 (+) | True | G310870 |
| TU368245 | lncRNA | downstream | 44595 | 19899878 ~ 19905766 (+) | True | G310905 |
| TU368246 | lncRNA | downstream | 44595 | 19899878 ~ 19905766 (+) | False | G310905 |
| TU368565 | lncRNA | downstream | 105818 | 19961101 ~ 19961315 (+) | True | G311204 |
| TU368568 | lncRNA | downstream | 107231 | 19962514 ~ 19963668 (+) | True | G311207 |
| TU368586 | lncRNA | downstream | 140781 | 19996064 ~ 19996270 (+) | True | G311225 |
| XM_026933004.2 | mRNA | upstream | 14038 | 19815906 ~ 19834429 (+) | True | si:dkey-264d12.1 |
| XM_034314141.1 | mRNA | upstream | 39146 | 19787822 ~ 19809321 (+) | True | per3 |
| XM_034314140.1 | mRNA | upstream | 39146 | 19787822 ~ 19809321 (+) | False | per3 |
| XM_034314142.1 | mRNA | upstream | 41255 | 19787821 ~ 19807212 (+) | False | per3 |
| XM_026932940.2 | mRNA | upstream | 64542 | 19768983 ~ 19783925 (+) | True | vamp3 |
| XM_026932461.2 | mRNA | downstream | 1781 | 19857064 ~ 19868481 (+) | True | si:dkey-264d12.5 |
| XM_026932463.2 | mRNA | downstream | 1781 | 19857064 ~ 19868481 (+) | False | si:dkey-264d12.5 |
| XM_034313999.1 | mRNA | downstream | 28543 | 19883826 ~ 19894420 (+) | True | si:ch211-193i15.1 |
| XM_026932696.2 | mRNA | downstream | 149122 | 20004405 ~ 20022989 (+) | True | mmel1 |
| XM_034314369.1 | mRNA | downstream | 186056 | 20041339 ~ 20053146 (+) | False | slc45a1 |
| TU368156 | other | upstream | 64554 | 19768990 ~ 19783913 (+) | False | vamp3 |
| TU368157 | other | upstream | 64554 | 19768990 ~ 19783913 (+) | False | vamp3 |
| TU368136 | other | upstream | 331308 | 19508255 ~ 19517159 (+) | False | phf13 |
| TU367971 | other | upstream | 760661 | 19087025 ~ 19087806 (+) | True | G310681 |
| TU367679 | other | upstream | 1156453 | 18687453 ~ 18692014 (+) | False | snrpe |
| XR_004580241.1 | other | downstream | 1015369 | 20870652 ~ 20882365 (+) | False | hnrnpa1a |
