RNA id: XM_026932462.2


Basic Information

Item Value
RNA id XM_026932462.2
length 2415
RNA type mRNA
GC content 0.53
exon number 20
gene id si:dkey-264d12.5
representative False

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19848467 ~ 19868481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACACGAtgaaggagatggaggagaagaTCACAGACAGGACCATGAGCGCCTGCACCGACTGCAACCAATCTGCGACAGCGGATACACGTGAGACCTCCGTCACCCACAGACAAGCAGACAATGTTAGAGATGGAGACGCGACTGCAGCAGGAGGGTCTGTGTTCGGAGGTCTCGTCTGACTCGGAGCGACTGGACCGTCTGTGGCGTCTCTTTGTCAAGAAGGAGAACAGTGTGAGGATGCTCACGCGGGAACTTGAGGAACTGCGAGCTAAACACGCCGCTGAAATCGACATGGTTCAGCTGTACATCCAGAACATCCGAAGTCTCTCCAAGACACGGGACTCGATGGCACTGGAGCTCGAGCGGGAAAACGAAACGCTTCATTCCAACCTGACGGAGCTCAATCTGCAGCAAGAGGCTCAGAAGAGTGAGATAGCTGAGATGTTGGTGCAGGAGGGCCTGGCTGAGATCATGACCAGCAGCCTGAGCGAGCAGGTGGCGTACCTCCTCGCAGACCGAGCTGCTCTCATGGAAAAGATTCAAGCCCTGGAAGATGGGGACTCGAAGACcctaaacgtaaagtgcactcAGAGACAAAGAGCTCCTGATGAAAATGTGGCACCACTGCAAGCTCAGAGCCCTTGGAAGAGGTTGCTTGGTTTCAGGAAGGCTGCACAGGCCAAGCAGGGGTTTACACATAATGATAACCAAGCCAATGAGGACAATACGTCTAAAGCCAGAGAGCGGAGTTTGCTGGAGAGGGACCTGGACGAGGCCTCCACCAGGCTGAACCTGGCTCACAAGGAGATCCGGCGCCTCACTGATGAGCTCGAGTCGGCTCACCTGACCAAGCGTACCTACGagTCAGAGCTCCATGGCGCGCAGGTGGAAGCTGAGCAGCTTAGGCGTGAGGTGGAGAAGCTGAAACGCTGTGATTTGGCTGAGGTTCAGGCGATAAAGGAGATGAAGGAGGTCCTGGATGCGGAGGTCCGTCATCTGAGGGACAGTGTTCACACCATGCATGCAGAACGTGCACAACTCCTAGAGCTGATTGATAGAAACTTTAAGGAGTTGGACAGTGAGGATGAGGACTTTATCCGTGCTTTGACCCGGAAACTGACGCCGACCCGTCGCACTCGCAAGAAACAAAAGGACGCCCATAAAAGGTGCCCAGAGGAGCTAGACGAAGGGCTCAGCAGCCTGCAGGAGCTAAATCAGGTTGTCGTGAAGCTCCAGGCCGATCTCGAGCAGGAGACGGAGCTGAGAAATAAGGTCGAGGAGGAGGAGTGCGATgatgagaggaggaggaaggaggcaGAACAGCAGACTCTGGAGCATCAGGACAAAGACCACAACGCCAAAGTGCAGCATCTTCAGCAAAAGCTGGTGGCTCTACACGCACAACTGGAACAGCTAAAATCTGTACTCACTGAGGAGCAGCGACGGGACCTGGCCATGAAGGTGCAGAATAACACGCAGAGCGCCCAGGACGTCCTCAAGACCACGCTCCAGGAGCAAGAGAACCTGAAGCTCAGACAGGACGCTGAGAGGCTGGAGGAGTTCTGTGAGAGACTCCAGACTGAGCTGCAGCAGGTCCACTGTAACCTTCATGTACACGTCAGaaaatatgATGAGCTGAAGGTGCGCCACCGAGAAAAACTTGCAGAAGCTAAACAGGTGTATCTCCGAGAGATGACGTGGCGTGATCAGAAGATGaaggagcaggagagagagctggacatCCTCACAAAGCGACTTAAGAAGGAGAGTGAGATGGTGAAAACGGTGACGGCTGAGAACGAAGCTCTGCTTCAGACCAAGAAGACGCTGCTGTGTCAGCTGAACGAAGCAGAAGAGAACCGAAAAAACGCAGCAGCCAAAATCTCTGCTCTGCAGCGAAGGGTCGATTTCCTGGAGAAGGACAGCATGCAGCAGTGGGAGATGAACATGGAGAAGTCCACGCAGATCGCCAAGCTCGAGAGACGGCTGTGGGACGTGGAATCTCTAAAAAGCACTCGGGTAGACATTCGAATGGCGCTAATAGGAGAAACTGTAGAAGGTTTTCACGTCATACACTACCTGCAGAAACATGATGGGAGTCGCATCCTGGAGGACAGAAAGGAAGCAGGTTTGAGTGAAAGTGGATTTGAAACGTCCATCATCTCAAAGACGAGAGACGAACTTGCGGAGAAACTCGGACTCTCTGCGTCTCCGAGTTCGAGCAGTGGTTCAGAGATGGGCTACATGAACATCTTTACACACAACCTGGTGTGACGCGAAGGCGGCGTTAACGccacaaGGCCTCAAAGTGCTGCAACAACGGTCTTTGGATGTCCCTACTATTTCCTCACCCCACTCTCTCTAAAACTCCATGCTGAGGTAGAGAGAGTGAGCGATAGTGCGAATAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580176.1 lncRNA upstream 5164 19839421 ~ 19848284 (+) True LOC117599874
XR_004580177.1 lncRNA upstream 7901 19839421 ~ 19845547 (+) False LOC117599874
TU368219 lncRNA upstream 16884 19835679 ~ 19836564 (+) True G310880
TU368221 lncRNA upstream 41713 19811438 ~ 19811735 (+) True G310882
TU368205 lncRNA upstream 136119 19717081 ~ 19717329 (+) True G310870
TU368245 lncRNA downstream 31397 19899878 ~ 19905766 (+) True G310905
TU368246 lncRNA downstream 31397 19899878 ~ 19905766 (+) False G310905
TU368565 lncRNA downstream 92620 19961101 ~ 19961315 (+) True G311204
TU368568 lncRNA downstream 94033 19962514 ~ 19963668 (+) True G311207
TU368586 lncRNA downstream 127583 19996064 ~ 19996270 (+) True G311225
XM_026933004.2 mRNA upstream 19019 19815906 ~ 19834429 (+) True si:dkey-264d12.1
XM_034314141.1 mRNA upstream 44127 19787822 ~ 19809321 (+) True per3
XM_034314140.1 mRNA upstream 44127 19787822 ~ 19809321 (+) False per3
XM_034314142.1 mRNA upstream 46236 19787821 ~ 19807212 (+) False per3
XM_026932940.2 mRNA upstream 69523 19768983 ~ 19783925 (+) True vamp3
XM_034313999.1 mRNA downstream 15345 19883826 ~ 19894420 (+) True si:ch211-193i15.1
XM_026932696.2 mRNA downstream 135924 20004405 ~ 20022989 (+) True mmel1
XM_034314369.1 mRNA downstream 172858 20041339 ~ 20053146 (+) False slc45a1
XM_026932557.2 mRNA downstream 172858 20041339 ~ 20050611 (+) True slc45a1
XM_026932955.2 mRNA downstream 267186 20135667 ~ 20145354 (+) True errfi1a
TU368156 other upstream 69535 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 69535 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 336289 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 765642 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1161434 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 1002171 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile