RNA id: TU368245


Basic Information

Item Value
RNA id TU368245
length 3741
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G310905
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19899878 ~ 19905766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTTTCCCCAAAACCATCTAATAACAAGAGCTGATTGCCTCGGATAAACGGCACCAGCCCTACACAACTGCACAGATCCCTGCTCCAGATGTGCTGCTTTACACATCCCATAATGCTGGGCGTTGCCCAAaccctttaaacacaaacagagcaaacattacacacacacacacacacacacacacacacggaataATATAAATAACCCAAGAGTGCAGAGGTAAATACACGGAatgaagaatgaaaagaaaaaaagagtgaaggCAAAAACAATTAAGTTTGGtctacattaacactaacagtGCCAATAATTAGTGCTCGCAGTGTCACAGAAACGcatttatatctattttatCCTCTCAGCTCATGTTCTTGGTCAGCTTTGTACAAATCTTTTTCTTGGTCTGGAACTCTCCACTACTGTGCAGCGACTTTTTCTCGGATATTTTAATTTACGTTATGGTAGAATTGAGGGAtggacaaatatatatatatatataaaaccaccaCCACTTTAGAGCACAAACGTTGGCCTTGGCATTCGAGTCACCACTTCATTTTAcccagggtgccaatacttacgGGTTGGCTTACCTAAACAGTAGCATTAATTAGCCGTGATACTCAAGAGCTCCGCTTTGGCTAGTTGTTTGTCTAATTCTAACATGGCCGCACACCTGGAGCGAACTCgtctcctcttcttcatctcctTAAATGCTGGGAATCGAGCTTTCCTCTACAATCGACTGCACGctagtgtgtttgttttggaccGCCCACTTTTCTCAAGCCAATCGAATCCCAATAAACAAAACCGAAGTCCCGCCAGTTCAAATATGTGACTGAAATATGCATTCCACAGAGTCTTTAAAGCAGATTCTGTGTCTGGACAAAACAAGTTAGCAGTGAATTAATGATCAGATGAGTTTGTGGCTTTGCACCTGTAAATAACTCAGCCATCTAAGGCACTGTGTTTATAAGAACGGTGTTAACTTCTGACTGAAAAATAGAGATGCACATCCAGCATCCTAGCGCCTTCATATAATAAATAACCTGGGAACTGGAAAAGAAGTGAAACAAAAGCAGAGAAACTCAGAACATGaacctaatttttttaaaaagcgaGTCCTGTTCATTAACATCACTGCCTTTTGTCTACAGGTTGTGCATCAGGACCAATATAACGACTGCTGACGACTGTAGCTTAAATCTGTCTGAGCGCTGTTCGACAAGCCTCATCGAACTTATCGcttataaaatcatttacaatAGTGGAGTGAAACACCAAAATAGTGATCCACAAACTAACATCTGGTAGGAGTCATCCTCAGCTGACAGGACTGATGCTGTTATTAAGGCATGGAAGAGCGTTTAACCAAGtattaggggaaaaaattacacatgcaactctttttttttttctctggggAGCTAATATTTAAGCCTGTCCTGAGTTTTGTACTTTGTTTATCTCAACTACATGAGATATTTACGGTCAAagcagaggtgccaatattgctaacaagaaaatcctagaaAAGAAATCTTAAAGAAGCAGAATTTTGTATGTCGATGGACGAGACGGCGATTCACTTTTTCAAAGCAACTGTtaagaaaaaagtcaaaaaattcACTACATAATATTAAGCAGCTTCTCCGTTTCTTTATCTGAAACACAAAATGGAGGCTTGCGTATTCACAGTTCAAAGGTCGCTGATATAAAGTCGAAAGCAAAAGTAACCACGACGAGAAGTGAAACTGCACCTCTCACTTGCCAAGtcctttccctttcagtgaaTCAGCTTTCCTGCCAGGCGAATATTATCTGGTGCCttatctgcaaaaacagaaTGAAGTAATCCTCAGGTCGTTCCCACATCACtgtagcaaggggtcaaaaatcataaatgctacgGATAAACCGTAAATTTTGGCACCCCTTTAAATTGCACACAGCCAGCGGAAGAAGCTTAACCATGTATTAGAGCTCACACACGAGAAGCTAATATTTATATCTAATCTGTGAGTTTTATACTGGCCTGAGTGTCAGGGTTTGCATTagacattcatttttaaagtcacaaagtcacatgatcatgaACTTTTTTTGTCCAGTGCACGTTTTCCTGGTACGCTATAGTGGGAAGCGGTTATTGCTGATGTGGGAACAAAACcacaaatacaaagaaattgTAAAGGCTCCCTGAAGCATTAGCACAAAAGAAGCCACATTTTATAATTAGGCCGTAGAGAATATCGTCGTAGCGAATGTTTACACTGCAGTAGTGGCAACATCCCTTCAGGGCAAACAAATGAGGAACAAAGTGCGTTCACAAACAGACGTAGTGTTCTTTAGAAAAAACAATTGTGCAGGACTTTCATGTAAGACTCTAAAGGCAGAACCCACGAGGTATCTGCCTCCACTGAACACACCACAACagaaaaaacccaacaacattaactatttacatgaaaaatagaaataaaaatgtttggcccttgtgtttttttttttttaaatatacatggAATGGATTGAGTTTGAATTTGCAAAATCAAGCAACTGCCTCGCACCATTTCTGCCTCGTTAAACGTGCTCGAGTTGACAGATGGCCCGATGCAGTAACAGCCCTTGCTTGTTTTAACACACTGACCGTCCCACTGAGACGTCCAGAGGAACAACAGCGTGACTTggaataaagaaataagaaatgaacACGAGtagaataaatttaaaaagatgGGAATAGGATCAGAAGAGCGTAGAGTCACTCGGTCACCTGCAATACGTTCAAAAACGTcctgttttataccacagccatgtcgaattcttgattctgattggtcagaatgtgattcattttctataagagtGCGGGTTTTTATTAaccattatcgtttctatagtaacagctcattcacacggACTTGAATGAAGGAATATCTACACAAAATCAAAGACTAATAAATTGTGATATAGCAAAAAATTTAAtcgttaatattattatttaatcgttgaagttttctgtaattagacatttatttaacgtttactgaaggagtctccagttctaCACCAcggaaagtcttcagaaaacaggaaattacctttttttgtggtttctcggtaacatgactcgcctcgttttttttttgttgttgttgttggtcttATCACTttgaagagagaggaaaaaaaaaaaagagacgctggtgaaggaaagactgtttacaGTTGCTATATTGTAAGTGAGAACCTGTTTCATGGGCAATCCACaatattaaacgtaactatgaacggataaaaagtacgacgtGTTGTTCTTCACTTGTGATCtctggctgtggtataaggggaataaaacacctcaggtcatgctgttataacaCAGTGTTCAACTTCTGGGTGGGAACTGTAactctgctgtgttttattcctcacgtAACCGACAGGTGACGCGAGTTCGTTCTTCCTGCAGCGTCCTGAAGCTCAAACAGGACAAGAAACTGAAGTGTCAGGGACAGAGTCAcctcaaacactcacacacccacacactcggACACGCTGCAATTACTGCTGGTCGATTGCAAAGACCGCTGCCCTGGATAAATGTCACCTGAGCAGCAGAACACCTGCCATTGTCATCACAGCGGGGGAACGGAAGAGaataaaatccattaaaaaaactcACAGTCTTATCTCATTAATCACCGGGAAGAtaaaatgtgtggaaaaaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368220 lncRNA upstream 44595 19848467 ~ 19855283 (+) False si:dkey-264d12.5
XR_004580176.1 lncRNA upstream 51594 19839421 ~ 19848284 (+) True LOC117599874
XR_004580177.1 lncRNA upstream 54331 19839421 ~ 19845547 (+) False LOC117599874
TU368219 lncRNA upstream 63314 19835679 ~ 19836564 (+) True G310880
TU368221 lncRNA upstream 88143 19811438 ~ 19811735 (+) True G310882
TU368565 lncRNA downstream 55335 19961101 ~ 19961315 (+) True G311204
TU368568 lncRNA downstream 56748 19962514 ~ 19963668 (+) True G311207
TU368586 lncRNA downstream 90298 19996064 ~ 19996270 (+) True G311225
TU368581 lncRNA downstream 122130 20027896 ~ 20028312 (+) True G311220
TU368598 lncRNA downstream 131439 20037205 ~ 20056574 (+) True G311227
XM_034313999.1 mRNA upstream 5458 19883826 ~ 19894420 (+) True si:ch211-193i15.1
XM_026932462.2 mRNA upstream 31397 19853448 ~ 19868481 (+) False si:dkey-264d12.5
XM_026932461.2 mRNA upstream 31397 19857064 ~ 19868481 (+) True si:dkey-264d12.5
XM_026932463.2 mRNA upstream 31397 19857064 ~ 19868481 (+) False si:dkey-264d12.5
XM_026933004.2 mRNA upstream 65449 19815906 ~ 19834429 (+) True si:dkey-264d12.1
XM_026932696.2 mRNA downstream 98639 20004405 ~ 20022989 (+) True mmel1
XM_034314369.1 mRNA downstream 135573 20041339 ~ 20053146 (+) False slc45a1
XM_026932557.2 mRNA downstream 135573 20041339 ~ 20050611 (+) True slc45a1
XM_026932955.2 mRNA downstream 229901 20135667 ~ 20145354 (+) True errfi1a
XM_026932768.2 mRNA downstream 274142 20179908 ~ 20237403 (+) True pax7a
TU368156 other upstream 115965 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 115965 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 382719 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 812072 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1207864 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 964886 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile